BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30365 (766 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 138 6e-34 SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 138 6e-34 SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.002 SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 29 0.55 SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 0.73 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.73 SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.9 SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 27 3.9 SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.8 SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 6.8 >SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 138 bits (335), Expect = 6e-34 Identities = 69/89 (77%), Positives = 75/89 (84%) Frame = +3 Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434 R+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV Sbjct: 54 RFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVD 113 Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521 A+ GPREDSTRIG AGTVRRQAV P Sbjct: 114 AVAACGPREDSTRIGSAGTVRRQAVDVSP 142 Score = 100 bits (239), Expect = 3e-22 Identities = 47/58 (81%), Positives = 55/58 (94%) Frame = +2 Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703 VNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR Sbjct: 146 VNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203 Score = 37.5 bits (83), Expect = 0.002 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = +1 Query: 85 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGGMH 264 A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AG Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56 Query: 265 T 267 T Sbjct: 57 T 57 >SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 138 bits (335), Expect = 6e-34 Identities = 69/89 (77%), Positives = 75/89 (84%) Frame = +3 Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434 R+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV Sbjct: 54 RFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVD 113 Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521 A+ GPREDSTRIG AGTVRRQAV P Sbjct: 114 AVAACGPREDSTRIGSAGTVRRQAVDVSP 142 Score = 100 bits (239), Expect = 3e-22 Identities = 47/58 (81%), Positives = 55/58 (94%) Frame = +2 Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703 VNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR Sbjct: 146 VNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203 Score = 35.1 bits (77), Expect = 0.011 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +1 Query: 106 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGGMHT 267 T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AG T Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQT 57 >SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 37.5 bits (83), Expect = 0.002 Identities = 23/53 (43%), Positives = 28/53 (52%) Frame = +3 Query: 297 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 455 V+ L N +M +GKK A +IV A II TGENP+ VL AI P Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174 >SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr 2|||Manual Length = 1136 Score = 29.5 bits (63), Expect = 0.55 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 246 FSWRYAHKRFRKAQCPIVERLT 311 FSWRY H+ +R A I E+L+ Sbjct: 1024 FSWRYKHQNYRDAAAIIYEKLS 1045 >SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 707 Score = 29.1 bits (62), Expect = 0.73 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 549 SQIAWLTRRKGETSRLDDELYP 484 SQ AWL+R KG S L +YP Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 29.1 bits (62), Expect = 0.73 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 356 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 454 G TYC C L+NW K S S C +L+T Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128 >SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 26.6 bits (56), Expect = 3.9 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 630 QLRVHLTPTPSKRRTSWSVLLNPTV 704 Q ++H P P +RR S + L NP++ Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148 >SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 26.6 bits (56), Expect = 3.9 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +3 Query: 429 VTAIINSGPREDSTRIGRAGT-VRRQAVMFHPCAESTKQSGFCAQVHVRLHSEILKQSQS 605 VT+ G R S + G RRQA M+ + +++ + + H R + +K QS Sbjct: 340 VTSYSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIRETMYDLKPHRRKDAAEMKFCQS 399 Query: 606 VLQ 614 VL+ Sbjct: 400 VLK 402 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 25.8 bits (54), Expect = 6.8 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +2 Query: 305 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 427 PYK+ + + W + G+TY + + + L R+ +AST Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177 >SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 25.8 bits (54), Expect = 6.8 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +1 Query: 121 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP----HSAGGMHTSVSVKPS 288 + ADI + FGR ++++++ + I+V+EKYAK P AG +H ++ Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVL 62 Query: 289 AQSWSAL 309 ++ AL Sbjct: 63 IETLVAL 69 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,035,297 Number of Sequences: 5004 Number of extensions: 61227 Number of successful extensions: 167 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 167 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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