BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30365 (766 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 155 3e-38 01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 155 5e-38 07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.4 03_06_0610 + 35052455-35053429,35054936-35055511 29 5.4 12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 7.1 06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 9.4 >11_04_0317 - 16328558-16328612,16328698-16328901,16329794-16330065, 16330152-16330220 Length = 199 Score = 155 bits (377), Expect = 3e-38 Identities = 74/89 (83%), Positives = 79/89 (88%) Frame = +3 Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434 RY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V Sbjct: 50 RYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVD 109 Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521 AIINSGPRED+TRIG AG VRRQAV P Sbjct: 110 AIINSGPREDATRIGSAGAVRRQAVDISP 138 Score = 108 bits (260), Expect = 4e-24 Identities = 52/58 (89%), Positives = 57/58 (98%) Frame = +2 Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703 VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR Sbjct: 142 VNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199 Score = 55.6 bits (128), Expect = 4e-08 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%) Frame = +1 Query: 139 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAG 255 E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AG Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAG 49 >01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 Length = 200 Score = 155 bits (375), Expect = 5e-38 Identities = 73/89 (82%), Positives = 79/89 (88%) Frame = +3 Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434 RY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V Sbjct: 51 RYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVD 110 Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521 AIINSGPRED+TRIG AG VRRQAV P Sbjct: 111 AIINSGPREDATRIGSAGAVRRQAVDISP 139 Score = 108 bits (260), Expect = 4e-24 Identities = 52/58 (89%), Positives = 57/58 (98%) Frame = +2 Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703 VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR Sbjct: 143 VNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200 Score = 50.8 bits (116), Expect = 1e-06 Identities = 23/39 (58%), Positives = 30/39 (76%), Gaps = 1/39 (2%) Frame = +1 Query: 142 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAG 255 +KLF WS DVQV+D+SL DY++V K+A YLPH+AG Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAG 50 >07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542, 571635-571885,572018-572128,572209-572320,572626-572716, 573168-573507,573678-573900,573946-574204,574274-574481, 574572-574622,574712-574870,574956-575120,575322-575399, 575732-576031,576107-576259,576871-576918,577019-577188, 577738-577852,578462-578623,578789-578893,578969-579199, 579277-579410,579484-579738,579822-580110,580214-580306, 580395-580520,580646-580897 Length = 1693 Score = 28.7 bits (61), Expect = 5.4 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +2 Query: 74 T*PRQAAWLWKPCLYHKPPTF 136 T P Q +WLW+ L H P F Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108 >03_06_0610 + 35052455-35053429,35054936-35055511 Length = 516 Score = 28.7 bits (61), Expect = 5.4 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = -2 Query: 192 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 25 ++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ + Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475 Query: 24 *K 19 K Sbjct: 476 AK 477 >12_02_0611 + 21118777-21119066,21119501-21119594,21119742-21120182, 21120267-21120866 Length = 474 Score = 28.3 bits (60), Expect = 7.1 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = +3 Query: 369 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVMFHPCAESTKQSG 548 ++H + + LL NP++ + I + +E +GRAG ++++ + C ES G Sbjct: 75 IRHGWSMRDLLL--NPIEEVA---IPARGKEKVGEVGRAGAMQKEEIKCFNCGESGHHQG 129 Query: 549 F 551 F Sbjct: 130 F 130 >06_02_0103 - 11829343-11829699,11831560-11831826,11832239-11832559, 11833783-11833844,11835413-11835446,11835539-11835619 Length = 373 Score = 27.9 bits (59), Expect = 9.4 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +1 Query: 73 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 243 ++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,820,205 Number of Sequences: 37544 Number of extensions: 406634 Number of successful extensions: 1017 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1015 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2051430072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -