Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30365
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 167 6e-42
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 31 1.0
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 31 1.3
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.1
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 28 7.2
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42) 28 7.2
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 28 9.5
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 167 bits (407), Expect = 6e-42
Identities = 79/89 (88%), Positives = 83/89 (93%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV
Sbjct: 123 RYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVN 182
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 183 AIINSGPREDSTRIGRAGTVRRQAVDVSP 211
Score = 116 bits (280), Expect = 2e-26
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 215 VNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 272
Score = 74.5 bits (175), Expect = 8e-14
Identities = 33/54 (61%), Positives = 43/54 (79%)
Frame = +1
Query: 94 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+AG
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAG 122
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 94 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 198
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 593 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 694
T +C+ DEL + +G NSY +K+K+ELER K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 157 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGGMHTSVSVKPSAQ 294
RWSC Q + +++ Y+ KE ++ LP +SV+ PS +
Sbjct: 59 RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 44 QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKR 223
++WP T + T +A W W Y TFL ++ C ++ R T+P K
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRKL 758
Query: 224 ST--QNIYLIQLEVCTQA 271
N+ L+ + +C A
Sbjct: 759 HALFMNLLLLFVSICRAA 776
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 631 CIN*FICNTLCDCFNISECSLTCTC 557
C+N +C+ C + SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 613 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 524
C C C + C CTC Q C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255
>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
Length = 603
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 314 VCKALHDWALGFTETLVCIPPAE*GKYFAYFSLTEM*SCRDISETC 177
VC+ H+W +G L+ P + K F FS T+M SC ++ C
Sbjct: 307 VCRNRHNWDIG-ASMLLRYPLDQSNKSF--FSWTDMASCDQLATAC 349
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 2 TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 85
+V G NF++V++ + WP T TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,223,895
Number of Sequences: 59808
Number of extensions: 482982
Number of successful extensions: 1369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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