Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30365
(766 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 170 5e-42
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 170 5e-42
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 170 5e-42
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 170 5e-42
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 165 1e-40
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 113 7e-25
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 92 2e-18
AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domai... 32 2.6
AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domai... 32 2.6
AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein. 32 2.6
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 31 4.5
M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein. 30 7.9
M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte a... 30 7.9
BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibilit... 30 7.9
BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein. 30 7.9
AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen pr... 30 7.9
AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen pr... 30 7.9
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 5e-42
Identities = 82/89 (92%), Positives = 83/89 (93%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV
Sbjct: 55 RYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 115 AIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 119 bits (287), Expect = 1e-26
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 VNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Score = 80.6 bits (190), Expect = 6e-15
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +1
Query: 118 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAG
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAG 54
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 5e-42
Identities = 82/89 (92%), Positives = 83/89 (93%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV
Sbjct: 55 RYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 115 AIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 119 bits (287), Expect = 1e-26
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 VNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Score = 80.6 bits (190), Expect = 6e-15
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +1
Query: 118 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAG
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAG 54
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 170 bits (413), Expect = 5e-42
Identities = 82/89 (92%), Positives = 83/89 (93%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV
Sbjct: 55 RYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 115 AIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 116 bits (278), Expect = 1e-25
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSN YAIKK+DELERVAKSNR
Sbjct: 147 VNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKRDELERVAKSNR 204
Score = 80.6 bits (190), Expect = 6e-15
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +1
Query: 118 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAG
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAG 54
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 5e-42
Identities = 82/89 (92%), Positives = 83/89 (93%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV
Sbjct: 55 RYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 115 AIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 119 bits (287), Expect = 1e-26
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 VNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Score = 80.6 bits (190), Expect = 6e-15
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +1
Query: 118 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAG
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAG 54
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 165 bits (402), Expect = 1e-40
Identities = 80/89 (89%), Positives = 81/89 (91%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RYA FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV
Sbjct: 55 RYAANAFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPREDSTRIGRAGTVRRQAV P
Sbjct: 115 AIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 119 bits (287), Expect = 1e-26
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 VNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Score = 80.6 bits (190), Expect = 6e-15
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +1
Query: 118 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAG
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAG 54
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 113 bits (272), Expect = 7e-25
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = +2
Query: 539 AIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
AIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 92.3 bits (219), Expect = 2e-18
Identities = 45/52 (86%), Positives = 46/52 (88%)
Frame = +3
Query: 282 AQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 437
AQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.9 bits (69), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 345 CHCSDRASLESL*GAPRLGTGLYGNACVHTSS 250
C C + ++ E G R G G YG AC H S
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEHRRS 1144
>AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.9 bits (69), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 345 CHCSDRASLESL*GAPRLGTGLYGNACVHTSS 250
C C + ++ E G R G G YG AC H S
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEHRRS 1144
>AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein.
Length = 1246
Score = 31.9 bits (69), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 345 CHCSDRASLESL*GAPRLGTGLYGNACVHTSS 250
C C + ++ E G R G G YG AC H S
Sbjct: 1130 CSCHNNSTCEPATGTCRCGPGFYGQACEHRRS 1161
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 31.1 bits (67), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 345 CHCSDRASLESL*GAPRLGTGLYGNACVH 259
C C + ++ E G R G G YG AC H
Sbjct: 1423 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1451
>M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
>M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte
antigen beta chain protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
>BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibility
complex, class II, DP beta 1 protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
>BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
>AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
>AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 30.3 bits (65), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 252
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF-DSDV 71
Query: 253 GGMHTSVSV-KPSAQSWSA 306
G + +P+A+ W++
Sbjct: 72 GEFRAVTELGRPAAEYWNS 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,899,628
Number of Sequences: 237096
Number of extensions: 2163774
Number of successful extensions: 4345
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4337
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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