Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30365
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   157   1e-38
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  157 bits (380), Expect = 1e-38
 Identities = 75/89 (84%), Positives = 80/89 (89%)
 Frame = +3

Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
           R+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV 
Sbjct: 61  RFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVN 120

Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
           A+INSGPREDSTRIGRAGTVRRQAV   P
Sbjct: 121 AVINSGPREDSTRIGRAGTVRRQAVDVAP 149



 Score =  119 bits (286), Expect = 3e-27
 Identities = 56/58 (96%), Positives = 58/58 (100%)
 Frame = +2

Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
           VNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 153 VNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +1

Query: 124 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAG 255
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAG
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAG 60


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 531 STKQSGFCAQVHVRLHSEILKQSQSVLQ 614
           S  QSGF    HV++  EIL+Q+  V++
Sbjct: 178 SDNQSGFVPSSHVKIPHEILQQASRVIK 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,318
Number of Sequences: 27780
Number of extensions: 357147
Number of successful extensions: 1029
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)