Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30365
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 153 2e-37
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 153 2e-37
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 153 2e-37
At2g45590.1 68415.m05669 protein kinase family protein contains ... 28 7.8
At1g59590.1 68414.m06702 expressed protein 28 7.8
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 153 bits (370), Expect = 2e-37
Identities = 72/89 (80%), Positives = 79/89 (88%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 58 RYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIID 117
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AI+NSGPRED+TRIG AG VRRQAV P
Sbjct: 118 AIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 108 bits (260), Expect = 3e-24
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 150 VNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAG 255
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AG
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAG 57
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 153 bits (370), Expect = 2e-37
Identities = 72/89 (80%), Positives = 79/89 (88%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 58 RYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIID 117
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AI+NSGPRED+TRIG AG VRRQAV P
Sbjct: 118 AIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 108 bits (260), Expect = 3e-24
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 150 VNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAG 255
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AG
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAG 57
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 153 bits (370), Expect = 2e-37
Identities = 72/89 (80%), Positives = 79/89 (88%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 58 RYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIID 117
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AI+NSGPRED+TRIG AG VRRQAV P
Sbjct: 118 AIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 109 bits (262), Expect = 2e-24
Identities = 53/58 (91%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 150 VNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/40 (57%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAG 255
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AG
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAG 57
>At2g45590.1 68415.m05669 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 683
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +2
Query: 167 ATMCKSLICLCRTTFPLKRSTQNIYLIQLEVCTQ----AFP*SPVPNRGAPYKLSNDAR 331
A +C ++ LC P+KR T + L ++ F SP P G P+K AR
Sbjct: 625 AVLCITIALLCLQRSPVKRPTMKEIVEMLSGVSEPPHLPFEFSPSPPMGFPFKSRKKAR 683
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 635 KGSSNSYAIKKKDELERVAKSNR 703
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,717
Number of Sequences: 28952
Number of extensions: 326325
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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