Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30364
         (478 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2QH12 Cluster: Similarity to carboxypeptidase S1 -Peni...    35   1.1  
UniRef50_A0L8L7 Cluster: TPR repeat-containing protein; n=1; Mag...    31   10.0 

>UniRef50_A2QH12 Cluster: Similarity to carboxypeptidase S1
           -Penicillium janthinellum precursor; n=5; Dikarya|Rep:
           Similarity to carboxypeptidase S1 -Penicillium
           janthinellum precursor - Aspergillus niger
          Length = 566

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 306 RYNSINTLRCKDGASSRSFNGVVSQPRHEYYFFW 205
           RY  + T  C+   S +SF+G V    HE+ FFW
Sbjct: 40  RYKQVPTGICETDPSVKSFSGYVDVAEHEHIFFW 73


>UniRef50_A0L8L7 Cluster: TPR repeat-containing protein; n=1;
           Magnetococcus sp. MC-1|Rep: TPR repeat-containing
           protein - Magnetococcus sp. (strain MC-1)
          Length = 822

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 128 MLNLKYAITKVN*TKYINETGGGCRDGLVIAVRTVPRAL 12
           M  LK A  +++   Y+N +G GC DG+++   T P  L
Sbjct: 556 MFALKPAPVQLSWAGYVNSSGLGCMDGVILDCYTAPAGL 594


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,705,957
Number of Sequences: 1657284
Number of extensions: 5523112
Number of successful extensions: 9959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9958
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)