Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30363
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    27   5.8  
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688...    27   7.6  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    27   7.6  

>07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,
            5886339-5886541,5886632-5886890,5887052-5887264,
            5887357-5887482,5887590-5887727,5887817-5888162,
            5888254-5888520,5888983-5889172,5889264-5889363,
            5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 456  FASHNKVIYPFCKSICVLLY-VI*ILCALDFENNC*NVSKFRPFW*FSMQINIY 298
            FA  N  IYP   SI +L+Y V+  +C L  +     +S F   W  S+ I+I+
Sbjct: 858  FAYINTTIYPL-TSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIF 910


>03_06_0389 - 33567385-33567969,33568052-33568402,33568646-33568848,
            33569044-33569299,33569459-33569671,33569757-33569882,
            33569965-33570102,33570191-33570536,33570630-33570896,
            33571192-33571378,33571457-33571556,33571659-33571909,
            33572242-33572428,33572562-33572573
          Length = 1073

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 456  FASHNKVIYPFCKSICVLLY-VI*ILCALDFENNC*NVSKFRPFW*FSMQINIY 298
            FA  N  IYP   SI +LLY ++  +C L  +     +S F   W  S+ ++I+
Sbjct: 844  FAYINTTIYPL-TSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIF 896


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -2

Query: 404 CCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKLFL 246
           CC      +  +L+++  +Y  L  +   QCK        F  +C   A L L
Sbjct: 87  CCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMACLLL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,353
Number of Sequences: 37544
Number of extensions: 191541
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)