Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30361
         (646 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    38   0.16 
UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    38   0.27 
UniRef50_Q6CAD5 Cluster: Similarity; n=2; Yarrowia lipolytica|Re...    36   1.1  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa...    34   3.4  
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   4.5  

>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 TCVSQNTGTCPESSCACPETSCACPE 234
           +C  ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404



 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 TCVSQNTGTCPESSCACPETSCACPE 234
           +C  ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 157 TCVSQN-TGTCPESSCACPETSCACPESS-LCPE 252
           TC  Q  T +C +  C C E SCACP ++  C E
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNTTCACTE 404



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 157 TCVSQN-TGTCPESSCACPETSCACPESS-LCPE 252
           TC  Q  T +C +  C C E SCACP ++  C E
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNTTCACTE 860


>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 37.5 bits (83), Expect = 0.27
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +1

Query: 448 SKPAEKKTASAPTAKPGSAK 507
           +KPAEKK A+AP+AKPGSAK
Sbjct: 79  AKPAEKKPAAAPSAKPGSAK 98



 Score = 33.1 bits (72), Expect = 5.9
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 600 SKLKIAPKPKKTGIK 644
           +KLKIAPKPKKTGIK
Sbjct: 129 AKLKIAPKPKKTGIK 143


>UniRef50_Q6CAD5 Cluster: Similarity; n=2; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 611

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 169 QNTGTCPESSCACPETSCACPESSLCPE 252
           + +   PE+S A PETS A PESS  PE
Sbjct: 126 ETSSAAPETSSAAPETSSAAPESSAAPE 153


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 157 TCVSQNTGTCPESSCACPETSCACPESSLCP 249
           TC +      PE +C  PE SCA PE +  P
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPEEAPAP 124


>UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Os09g0441900 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 444

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 157 TCVSQNTGTCPESSCACPETSCACPESSLC 246
           +C   N   C   SC  P  SC+CP  S C
Sbjct: 169 SCCKPNCSCCKTPSCCKPNCSCSCPSCSSC 198


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 166 SQNTGTCPESSCACPETSC 222
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,578,262
Number of Sequences: 1657284
Number of extensions: 2714988
Number of successful extensions: 9595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9497
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)