Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30359
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    24   1.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    24   1.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.6  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 603 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP 695
           N+ +  ++ +SF  K CN+     P+ F  P
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKP 35


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 603 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP 695
           N+ +  ++ +SF  K CN+     P+ F  P
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKP 35


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 348 YQYVKKPKKI 319
           YQ VKKPKKI
Sbjct: 292 YQEVKKPKKI 301


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 448 LENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCK 335
           L N + A +    V    +  + NS+   W LG  +CK
Sbjct: 107 LVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGREMCK 144


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 448 LENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCK 335
           L N + A +    V    +  + NS+   W LG  +CK
Sbjct: 107 LVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGREMCK 144


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = +3

Query: 492 DRWPWSLLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR 671
           D W   + G          L  N VV VR   + + GN     ++  +FL       P  
Sbjct: 273 DDWAKEMAGMRIIAEKFANLTDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLS 332

Query: 672 GP 677
            P
Sbjct: 333 NP 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,389
Number of Sequences: 336
Number of extensions: 3354
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)