Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30359
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 100 2e-22
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 100 2e-22
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 98 9e-22
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 72 9e-14
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 72 9e-14
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 1.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 3.4
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 4.5
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 4.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 5.9
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.9
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 7.8
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 7.8
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 7.8
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 100 bits (239), Expect = 2e-22
Identities = 44/62 (70%), Positives = 54/62 (87%)
Frame = +3
Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
LLGRLA+V+AK LL G KVV+VRCE++NISG+FFRNKLK +++LRK C NP+RG FHFR
Sbjct: 16 LLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFR 75
Query: 690 AP 695
AP
Sbjct: 76 AP 77
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 100 bits (239), Expect = 2e-22
Identities = 44/62 (70%), Positives = 54/62 (87%)
Frame = +3
Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
LLGRLA+V+AK LL G KVV+VRCE++NISG+FFRNKLK +++LRK C NP+RG FHFR
Sbjct: 16 LLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFR 75
Query: 690 AP 695
AP
Sbjct: 76 AP 77
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 98.3 bits (234), Expect = 9e-22
Identities = 42/62 (67%), Positives = 53/62 (85%)
Frame = +3
Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
L+GRLA+ +AK LL G KVV+VRCE++NISG+FFRNKLK +++LRK C NP+RG FHFR
Sbjct: 16 LMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFR 75
Query: 690 AP 695
AP
Sbjct: 76 AP 77
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 71.7 bits (168), Expect = 9e-14
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = -2
Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG +GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 261 E 259
E
Sbjct: 61 E 61
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = -1
Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
RL + KKTV+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 64 RLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 71.7 bits (168), Expect = 9e-14
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = -2
Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG +GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 261 E 259
E
Sbjct: 61 E 61
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -1
Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
RL + +K V+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 64 RLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 170 SDNALLDTFMAEDTTINTFH 229
SDNA +DT ++ED TIN H
Sbjct: 83 SDNAAIDTDISEDETINQRH 102
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 420 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 313
RR + N KS+++R PG L + KPK R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 69 LSPKIHFVAFFADLVLACCALRTFTIFCSS 158
L IH A + L+CC T I+CSS
Sbjct: 9 LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 420 RRRLSYNTKSN-QRRIVRTPGGRLVY 346
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 492 DRWPWSLLGRLAAVIAKVLLEGN 560
D +PW LLG +I ++L +GN
Sbjct: 874 DVFPWDLLGEHKKIIQQLLSKGN 896
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 507 TTAIDHYGLIAKARHFHSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRL 352
TT +D YG + F+ S T SY++ S RR+ R PG ++
Sbjct: 327 TTPLDTYGNRPSGKKFNKNSKFRPPGSTIS---SYSSASTLRRLPRAPGSKV 375
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 691 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTKTTLFPSRRTLAMTA 527
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 528 AVIAKVLLEGNKVVLVRCEQINISGNFF 611
AV K++ G K V++RC+ I + +FF
Sbjct: 164 AVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 583 SQRTKTTLFPSRRTLAMTAARRPSRDHGHRSLWPY 479
S +KTT P+R T + AR+PS++ R++W +
Sbjct: 27 SASSKTTE-PARLTKHKSLARKPSQNFITRTIWTF 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,978
Number of Sequences: 5004
Number of extensions: 55014
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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