Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30359
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 83 2e-16
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 83 2e-16
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 81 1e-15
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 81 1e-15
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 79 3e-15
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 29 3.5
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 29 3.5
01_07_0169 + 41650339-41651217 29 3.5
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 28 6.2
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +3
Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
+LGRLA+++AK LL G +VV+VRCE++ ISG R K+K + FLRKR N P+ GP HFR
Sbjct: 20 MLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 79
Query: 690 AP 695
AP
Sbjct: 80 AP 81
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +3
Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
+LGRLA++IAK LL G +VV+VRCE+I +SG R K+K + FLRKR N P+ GP HFR
Sbjct: 20 MLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 79
Query: 690 AP 695
+P
Sbjct: 80 SP 81
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = -2
Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K +GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 261 E 259
E
Sbjct: 61 E 61
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
RL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 66 RLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = -2
Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K +GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 261 E 259
E
Sbjct: 61 E 61
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
RL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 66 RLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 79.4 bits (187), Expect = 3e-15
Identities = 37/61 (60%), Positives = 44/61 (72%)
Frame = -2
Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K +GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 261 E 259
E
Sbjct: 61 E 61
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
RL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 66 RLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 467 RALAIRP**SMAVVSAGPSGGSHRQGPSRREQSCFGSLRTNQHLWQLL*EQTQAY 631
R + P S A ++G +GG H + R SC R +HL+ +L + + Y
Sbjct: 235 RTMCSPPSRSRAYAASGGTGGGHYRSRCLRSCSCDEHSRRRRHLYLVLDDWKEGY 289
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 242 VAKTERSAGLAGWIPRNLLLH*PHLGIFL 328
V +T+ LA W P+ L+L P +G+FL
Sbjct: 352 VGETKERGVLASWCPQELVLSHPSVGLFL 380
>01_07_0169 + 41650339-41651217
Length = 292
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 584 FAANQNNFVPFEKDLGDDCRQTAQQRPRPSITMALLLKP 468
FAA+ +N + + L D R+ +RPRP T L+ KP
Sbjct: 232 FAASVDNARAYNQGLIDHVRRGTPRRPRPLETYTLVEKP 270
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 521 SGGSHRQGPSRREQSCFGSLRTNQHL 598
SGG HR+ SRR G L TN+ L
Sbjct: 270 SGGEHRRKTSRRRSLIIGWLTTNKQL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,036
Number of Sequences: 37544
Number of extensions: 391524
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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