Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30359
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          54   1e-07
SB_35877| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   1.6  
SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   4.8  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = -1

Query: 238 KKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 140
           +KTV R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 13  QKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_35877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 469 PSFSLKKLENGAAAYIQATTVVQHKIKSKKNSKDTGW-PLGL 347
           PS SLK LE    A+ Q ++++   I   ++ KD GW P GL
Sbjct: 23  PSQSLKPLERPLRAHFQCSSILDEFIPDARD-KDVGWAPCGL 63


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 424 IQATTVVQHKIKSKKNSKDTGWPLGLSV 341
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 472 SPSFSLKKLENGAAAYIQATTVVQHK-IKSKKNSKDTGWPLGLSVCKKAQEDPK 314
           S S SLK + N AA    + ++  +K I  KKN  +    LG  +C+K + + K
Sbjct: 211 SRSISLKDIFNAAAKSSHSESIQWNKYINCKKNKTNLAAFLGEQLCEKGKREQK 264


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 417 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 328
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 525 PDGPAETTAIDHYGLIAKARHFHSKSLKMVQRLTFRRRLSYNTKSNQRRIVRT 367
           P G +  ++  H G    +R F S   K   R T + R S++  SN+R   RT
Sbjct: 731 PSGSSYNSSTLHSGSQYTSRTFTSAGSKSSSRSTLQHRHSFHGTSNKRSSWRT 783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,251,354
Number of Sequences: 59808
Number of extensions: 435412
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)