Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30359
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)          85   3e-17
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...    84   7e-17
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...    83   2e-16
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...    81   7e-16
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden...    71   7e-13
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi...    69   3e-12
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi...    69   4e-12
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    28   6.8  
At1g48740.1 68414.m05454 expressed protein                             28   6.8  
At5g01180.1 68418.m00022 proton-dependent oligopeptide transport...    27   9.0  
At3g13800.1 68416.m01743 metallo-beta-lactamase family protein s...    27   9.0  

>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/62 (61%), Positives = 46/62 (74%)
 Frame = +3

Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
           +LGRLA++ AK LL G KVV+VRCE+I +SG   R K+K M FLRKR N  P+ GP HFR
Sbjct: 20  MLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79

Query: 690 AP 695
           AP
Sbjct: 80  AP 81


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +3

Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
           +LGRLA+V+AK LL G  +V+VRCE+I +SG   R K+K M FLRKR N  P+ GP HFR
Sbjct: 20  MLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79

Query: 690 AP 695
           AP
Sbjct: 80  AP 81


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/62 (59%), Positives = 45/62 (72%)
 Frame = +3

Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
           + GRLA++IAK LL G  VV+VRCE+I +SG   R K+K M FLRKR N  P+ GP HFR
Sbjct: 20  MCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79

Query: 690 AP 695
           AP
Sbjct: 80  AP 81


>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/62 (59%), Positives = 45/62 (72%)
 Frame = +3

Query: 510 LLGRLAAVIAKVLLEGNKVVLVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 689
           +LGRLA+  AK LL G +VV+VRCE+I +SG   R K+K M FLRKR N  P+ GP HFR
Sbjct: 20  MLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79

Query: 690 AP 695
           AP
Sbjct: 80  AP 81


>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
           identical to GB:Q42351, location of EST 105E2T7,
           gb|T22624
          Length = 120

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = -2

Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
           MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ  KK    P+C     + +GI   RP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 261 E 259
           E
Sbjct: 61  E 61



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = -1

Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
           RL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 66  RLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
           to SP:Q42351 from [Arabidopsis thaliana]
          Length = 119

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = -2

Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ  KK    P+C     + +GI   RP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 261 E 259
           E
Sbjct: 61  E 61



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = -1

Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
           RL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 66  RLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
           to 60S ribosomal protein L34 GB:P41098 [Nicotiana
           tabacum]
          Length = 120

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = -2

Query: 441 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKFRGIQPARPA 262
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ   K    P+C     + +GI   RPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 261 E 259
           E
Sbjct: 61  E 61



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -1

Query: 253 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 137
           RL   ++TV R YGGVL    V++RIVRAFL+EEQKIVK
Sbjct: 66  RLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 388 SKKNSKDTGWPLGLSVCKKAQEDPKVWSVQE 296
           SK   K + WP+      KA+ DPKV +V E
Sbjct: 58  SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 426 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 343
           +FR+ +S NTK + RRI+  P  G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158


>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 570

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 176 NALLDTFMAEDTTINTFHCFLTVAKTERSAGLAGWIPRNL 295
           +AL  T +A    ++TF   L V K  RS G  GWI +NL
Sbjct: 492 SALSLTAIAFGNYLSTFLVTL-VTKVTRSGGRPGWIAKNL 530


>At3g13800.1 68416.m01743 metallo-beta-lactamase family protein
           similar to Metal Dependent Hydrolase GB:AAD18619 from
           [Chlamydophila pneumoniae]
          Length = 361

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 497 MAVVSAGPSGGSHRQGPSRREQSCFGSLRTNQ 592
           MA +SA  S G     PS R  SCF SLR +Q
Sbjct: 1   MAAMSAVLSLGLGTLRPSHRSLSCFDSLRHHQ 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,582
Number of Sequences: 28952
Number of extensions: 305144
Number of successful extensions: 909
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)