Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30358
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    54   1e-07
Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon gu...    29   2.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   2.7  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   2.7  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    28   8.2  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    28   8.2  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    28   8.2  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 36/60 (60%)
 Frame = +3

Query: 18  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 197
           D+LF ++N F++G+YQ  I EA   S        ++D +LYRSYIAQG   I  +E+  A
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = +2

Query: 263 IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAM 442
           I+A++   VA    + +EI  ++AATI    D  + A + +   E LE RA  +  L+ M
Sbjct: 87  ILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQDAFRAVSRFEGLEARASKVFILIKM 145

Query: 443 NRPDLARKQLKLLQDIEDDGTL 508
           N+  LA  ++K +  I++D TL
Sbjct: 146 NKRKLAIGEVKKMNQIDEDATL 167


>Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical
           protein C07E3.8 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 353 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 448
           E  +E   +  H+ ESLE+ +FT+ CLL  NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148


>U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform b protein.
          Length = 714

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 337 CSHNQEYFIGQFRTFSYSSINISNNGRLLASGSK*STKLF-NGCSIGSAVFSSCCTIL 167
           CSH+ +  I +  + S + IN SN+  LLA G+  ST+L+ + C    A+      IL
Sbjct: 366 CSHHLDSRIEREFSMSVNEINESNDCNLLAYGTLLSTQLYKSSCGKVCALLRDASHIL 423


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 337  CSHNQEYFIGQFRTFSYSSINISNNGRLLASGSK*STKLF-NGCSIGSAVFSSCCTIL 167
            CSH+ +  I +  + S + IN SN+  LLA G+  ST+L+ + C    A+      IL
Sbjct: 2538 CSHHLDSRIEREFSMSVNEINESNDCNLLAYGTLLSTQLYKSSCGKVCALLRDASHIL 2595


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 337  CSHNQEYFIGQFRTFSYSSINISNNGRLLASGSK*STKLF-NGCSIGSAVFSSCCTIL 167
            CSH+ +  I +  + S + IN SN+  LLA G+  ST+L+ + C    A+      IL
Sbjct: 2566 CSHHLDSRIEREFSMSVNEINESNDCNLLAYGTLLSTQLYKSSCGKVCALLRDASHIL 2623


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 302 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 466
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 302 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 466
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469

Query: 488 IEDDGTLR 511
           I  +  LR
Sbjct: 470 INSERALR 477


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469

Query: 488 IEDDGTLR 511
           I  +  LR
Sbjct: 470 INSERALR 477


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 308 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 487
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 462 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 517

Query: 488 IEDDGTLR 511
           I  +  LR
Sbjct: 518 INSERALR 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,328
Number of Sequences: 27780
Number of extensions: 314792
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)