Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30356
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   8.5  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 419  KCQSIGHEFATELRSLSIGLMLWANRL 339
            KCQS+  EF TELR L   L   + RL
Sbjct: 962  KCQSMEREFKTELRKLDGVLEARSKRL 988


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 337 TTLHKRNRKREMTSFWHLSSVCTIKIKCY 251
           T+L +R +  E+TSF   +S+ ++  KCY
Sbjct: 327 TSLQQRQKLEEITSFLSFNSLKSLCSKCY 355


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 310  VYGYVYEELCNRLAHSISPIDNDRSSVANS 399
            V  +VY+ L + LAH I+  D+    + N+
Sbjct: 1042 VLKFVYDNLASCLAHEINAADSSSEQICNA 1071


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 VYGYVYEELCNRLAHSISPIDNDRSSVANS 399
           V+   Y+ L N L H IS + ND   + N+
Sbjct: 334 VFESSYQPLINDLDHQISVMQNDEKRINNA 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,107
Number of Sequences: 5004
Number of extensions: 34773
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)