Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30356
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32210| Best HMM Match : Ribosomal_S14 (HMM E-Value=1.2)             28   5.1  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                28   5.1  
SB_32089| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 27   8.8  

>SB_32210| Best HMM Match : Ribosomal_S14 (HMM E-Value=1.2)
          Length = 129

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 53  KKE*NTLSIRECRGTIQEQRGFKIKQNEF*SFLLLSPNRFKTILSFRL 196
           K++   L+     GT  ++R  K K+ +   FL L  +RF  +L FRL
Sbjct: 64  KRKRRALNFPILTGTQAQERKSKRKRTQLLDFLALMFDRFSLVLRFRL 111


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 549 SSLSTQNLKSPSVLNGEAVPVIALASQ*LLCHLN 448
           SSL    L   S+ NG+    +  AS  +LCHLN
Sbjct: 589 SSLIALRLAIESLENGDCEAAVVCASNIILCHLN 622


>SB_32089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 VYGYVYEELCN-RLAHSISPIDNDRSSVANS*PIDWHFTE 426
           +YG   ++LCN R  HS + +D D + ++    I W +TE
Sbjct: 59  LYGLT-KQLCNERPRHSTAVLDKDGNLLSKKEEIQWRWTE 97


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 528 LKSPSVLNGEAVPVIALASQ*LLCHLNTHPARQRLRE 418
           + SP ++   A  VI + S+    H+N H AR+RLR+
Sbjct: 283 ISSPLLIMSAAYTVIMIRSR--ASHINGHGARERLRD 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,250
Number of Sequences: 59808
Number of extensions: 256859
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)