Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30354
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   108   7e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    60   3e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    49   6e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    40   3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    39   7e-04
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    31   0.18 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.31 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.72 
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    28   0.95 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    27   2.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.8  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    26   5.1  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.7  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  108 bits (259), Expect = 7e-25
 Identities = 53/83 (63%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
           SAAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN A
Sbjct: 37  SAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTA 96

Query: 434 NVIRYFPTQALNFAFKDKYKQVF 502
           NV+RYFPTQALNFAFKDK+K++F
Sbjct: 97  NVLRYFPTQALNFAFKDKFKKMF 119



 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           + A S   V  ++  +  L     S +   ++++ G+VD + +  +  GL   +RG   +
Sbjct: 142 AGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPS 201

Query: 437 VIRYFPTQALNFAFKDKYKQVFL 505
           V+     + L F   D  K V L
Sbjct: 202 VVGIVVYRGLYFGMYDTLKPVVL 224



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 583 SLCFVYPLDFARTR 624
           SL FVY LD+ARTR
Sbjct: 146 SLLFVYSLDYARTR 159


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 31/80 (38%), Positives = 49/80 (61%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           +A VS+TAV+P+ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  N
Sbjct: 30  AATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTN 82

Query: 437 VIRYFPTQALNFAFKDKYKQ 496
            +R FP  A+ FA  +  KQ
Sbjct: 83  CLRAFPYGAVQFATFNMLKQ 102



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +2

Query: 254 FSAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
           F+  + +T   P + ++   QV  +         YK I  A   I K +G+  F+RG  +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291

Query: 434 NVIRYFPTQALNF 472
           N+++  P  ++ +
Sbjct: 292 NMLKIIPVMSITW 304


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 29/93 (31%), Positives = 50/93 (53%)
 Frame = +2

Query: 227 VR*GLPGWRFSAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
           V+ G+ G   +  V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I    GL
Sbjct: 18  VKSGIAGGT-AGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75

Query: 407 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
              ++G+ A + R FP   + F   ++ ++V +
Sbjct: 76  HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = +2

Query: 254 FSAAVSKTAVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRG 424
           F    +  AVA I  V  L  L V     Q++  +  Y G  D   +I K +G    +RG
Sbjct: 8   FPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRG 67

Query: 425 NFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSSGVTSLV 550
               ++   P +AL FA  D Y +++     R+ SS   S++
Sbjct: 68  ILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109



 Score = 32.7 bits (71), Expect = 0.044
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 281 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
           V P E +K+ LQ V++ SK       Y G VD F +I K++ +L+ + G  A + R+   
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174

Query: 458 QALNFAFKDKYKQVFLGALTR 520
            A  F    K +     A +R
Sbjct: 175 NAGYFGVIQKIRNSLTPASSR 195


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           S +   T V P+  ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N
Sbjct: 345 SGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPN 401

Query: 437 VIRYFPTQALNFAFKDKYKQ 496
           +++  P+ A+++   +  K+
Sbjct: 402 LLKVAPSVAISYLVYENCKK 421



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFA 433
           + +V++  + P++ +K  +Q   +S+     Q  K I+ +  + + K  G+  ++RG   
Sbjct: 238 AGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLV 293

Query: 434 NVIRYFPTQALNFAFKDKYKQVFLGALTRR 523
            ++  FP  A +    +  K+ ++G L  R
Sbjct: 294 GILGMFPYSATDLGTFEGLKRTWIGILASR 323


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 466
           PI+ VK  +Q       ++A + YK  +    +I  + GLL FW G    + R   +  +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276

Query: 467 NFAFKDKYKQV 499
            F   +K  ++
Sbjct: 277 VFTVYEKVMEI 287


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 329 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 472
           S  I    +Y G++  F  +  EQG++  + G  A+++R  P   + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 341 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 439
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 269 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 439
           S   VAP++ VK   Q Q         +      G + +   I   +G+   +RG    +
Sbjct: 19  SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78

Query: 440 IRYFPTQALNFAFKDKYKQVF 502
           + Y P+ ++ F   +K K +F
Sbjct: 79  LGYLPSWSIYFVVYEKCKVLF 99


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 472 RLQGQVQAGVPRRVDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 621
           RLQ Q  A +P  V  + +FWR F            TS+ F    P DFA T
Sbjct: 7   RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 239 LPGWRFSAAVSKTA----VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
           +P +  S A+S  A    V P+E V++ LQ+Q   K +     Y G  D   +I  + GL
Sbjct: 112 MPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGL 166

Query: 407 LSFWRG 424
               +G
Sbjct: 167 SGIMKG 172


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 381 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAVLETAAENRQPG 241
           T+ + + +  WSA I +LT C    SLT S+  T +  +   +++ G
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDIPRSIVYSQKYG 579


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 77  YEITPNLLFKNQELVFRDPPSACAATPTSTY 169
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/81 (20%), Positives = 34/81 (41%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           S+ + +  +AP + +K+ +Q+   S +             F    +++G+ + WRGN   
Sbjct: 26  SSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNVVA 74

Query: 437 VIRYFPTQALNFAFKDKYKQV 499
            + Y    A  F    K K +
Sbjct: 75  ELLYLVYGAAEFVAFSKLKHL 95


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 365 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
           +++    + + +GL  F+RG +  V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,610
Number of Sequences: 5004
Number of extensions: 46644
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)