Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30353
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   6.5  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -3

Query: 734 LQDAPLMSMTLQFF*YITYV*LLNFHVTRIFFRIFSSDSKCFRDIETEIVHNYGNYIYIF 555
           ++D P ++  L+ F   T V  L   ++   FR  SS        E EI     NY Y+F
Sbjct: 484 IEDLPFLNSLLRTF-LPTLVYSLFISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLF 542

Query: 554 VKLKL*FI 531
           V   L ++
Sbjct: 543 VNFFLVYV 550


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 366 IKKYLRYKRIILSQFN**LHHHTFTCKTCSFIFDN*KTKW 485
           I  YL YK I+         H + TCK+ S++FD+ KT W
Sbjct: 17  ISTYLDYKDIV---------HLSETCKSLSYVFDD-KTIW 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,790
Number of Sequences: 5004
Number of extensions: 53030
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)