Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30353
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055...    29   5.1  

>02_05_1056 -
           33804717-33804871,33805352-33805418,33805508-33805576,
           33806414-33806548,33806609-33806680,33807281-33807375,
           33807778-33807859,33807949-33807999,33808107-33808187,
           33808534-33808575,33808705-33808803,33809044-33809115,
           33809166-33809270
          Length = 374

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 165 SHQRPKDTMETKL*LIILYSHIPSCKTAVSVDSKR 61
           + QRP    + +  L++L  HIP CK + ++D +R
Sbjct: 6   ARQRPSVAAKQEKVLLVLILHIPYCKYSQAIDLQR 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,403
Number of Sequences: 37544
Number of extensions: 262422
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)