Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30353
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    27   9.9  
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 614 IWSRMRKCGKKFELRENSIITRMLC 688
           +W +M+ CG K  L   +I+  MLC
Sbjct: 595 LWDKMKSCGIKPSLMSCNIVVGMLC 619


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 210 RNHKRYEVNRKSRKNQKILVTMLLML 287
           R H R E  RK+RKN  I+   L++L
Sbjct: 11  REHVRLEARRKTRKNIAIIAVSLVIL 36


>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 687

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 659 HVTRIFFRIFSSDSKCFRDIETEIVHNYG 573
           HV+RI   I S + KC  D+   ++  YG
Sbjct: 61  HVSRIVELIRSQECKCDEDVALSVIKTYG 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,306
Number of Sequences: 28952
Number of extensions: 246579
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)