Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30352
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    78   1e-15
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    77   2e-15
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   0.87 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   3.5  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   6.1  
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    25   8.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPN-KRVI 179
           WT+SAFG LD +FGS    ++ KKN+ LP+   +N ++TRL+ SDEI+ +++A    RV 
Sbjct: 252 WTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVK 311

Query: 180 RA-TRKLNPLTNNKAMLKLNPYAAVLRGKL 266
           RA  +K NPL N   + +LNPYA   +  +
Sbjct: 312 RAHVQKKNPLKNKAVLARLNPYAKAYKANV 341


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPN-KRVI 179
           WT+SAFG LD +FGS    ++ KKN+ LP+   +N ++TRL+ SDEI+ +++A    RV 
Sbjct: 252 WTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVK 311

Query: 180 RA-TRKLNPLTNNKAMLKLNPYAAVLRGKL 266
           RA  +K NPL N   + +LNPYA   +  +
Sbjct: 312 RAHVQKKNPLKNKAVLSRLNPYAKAYKANV 341


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 143 QEGPPCSQQTRDPCYTQIEPTH**QGDAETQSLRGRAERKAILELRRR-KNLKALADAEK 319
           Q+     Q   D  YTQ+  +     D   Q      +R   LELR+R KNL    + +K
Sbjct: 582 QDEMAAKQSMIDSAYTQLRESTKKLSDLREQLHVSETQRTLFLELRQRCKNLMTSIEEQK 641

Query: 320 SGL-KLYK 340
           S L  LY+
Sbjct: 642 SELSNLYE 649


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 63  KQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 239
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 224 AETQSLRGRAERKAILELRRRKNLKALADAEKSGLKLYKRNPAMKAEKLRERR 382
           A  Q LR   E K ILE R+R+      + E+   +L ++    K  +LRE +
Sbjct: 688 AREQRLR-EEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAK 739


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 245 RVRIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 129
           + ++ F H L + +WV+ +       +G   + PD +RL
Sbjct: 171 KYKVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 14  RIRQA*PLIRVMEDTIKTKEELQPAPTEXGQH*PHTSS 127
           R+  +   ++  ED++KTK ELQ A  +  ++ P TS+
Sbjct: 77  RLEDSISSLQRQEDSLKTKYELQEARLDMLKNRPATSA 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,137
Number of Sequences: 5004
Number of extensions: 29464
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)