Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30352
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           91   8e-19
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    88   6e-18
08_02_1293 - 25945888-25946026,25946257-25946315,25946458-259465...    30   1.2  
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415           29   2.0  
02_04_0073 - 19471254-19472681                                         29   2.7  
03_05_1101 - 30408944-30410410                                         28   6.2  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 40/85 (47%), Positives = 60/85 (70%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIR 182
           WT+SAF +L+ ++G+++ PS +KK F LP+PK AN +L R++ SDE++ V++  NK V R
Sbjct: 257 WTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKR 316

Query: 183 ATRKLNPLTNNKAMLKLNPYAAVLR 257
             ++ NPL N  A+LKLNPY    R
Sbjct: 317 REKRKNPLKNVAAVLKLNPYFGTAR 341


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 40/85 (47%), Positives = 57/85 (67%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIR 182
           WT+ AF +LD ++G + TP+ +KK F LP+PK AN +L+RL+ SDE++ V++  NK V  
Sbjct: 256 WTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKL 315

Query: 183 ATRKLNPLTNNKAMLKLNPYAAVLR 257
              + NPL N  A+LKLNPY    R
Sbjct: 316 REARRNPLKNVAAVLKLNPYFGTAR 340


>08_02_1293 -
           25945888-25946026,25946257-25946315,25946458-25946543,
           25946800-25946845,25946953-25947405
          Length = 260

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 215 QGDAETQSLRGRAE-RKAILELRRRKNLKALADAEKSGLKLYKRNPA 352
           +GD + QSL  RA  R+A L  RRR+ +  +      G+  + R PA
Sbjct: 42  EGDEDGQSLSARARGRRARLSARRRERIVVVEGGGVGGIGEFLRQPA 88


>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
          Length = 126

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +2

Query: 248 RAERKAILELRRRKNLKALADAEKSGLKLYKRNPAMKAEKLRERRRK 388
           RAE K ILELR++   KA A  +K   K  K+N   K +K +++++K
Sbjct: 33  RAELKKILELRKK---KAKAKVKKKPKK--KKNKKAKKKKKKKKKKK 74


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 10  SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRXPTLTSHVFSSLMR 141
           +P   G +P S HG HH++++   T  N +   L   V   ++R
Sbjct: 20  APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63


>03_05_1101 - 30408944-30410410
          Length = 488

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 539 ALGLSSALGLWPWVSRPFQLSASYLPSSWEE 447
           ALGL ++   + WV RP   S  + P  WE+
Sbjct: 304 ALGLEASNHPFLWVIRPEDSSGRWAPEGWEQ 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,017,973
Number of Sequences: 37544
Number of extensions: 206871
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)