Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30352
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   32   0.30 
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                31   0.69 
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_48059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 215 QGDAETQSLRGRAERKAILELRRRKNLKALADAEKSGLKLYKRNPAMKAEKLRE 376
           Q +AE + L    ERKA+L  R ++   A+ DAE   L+L  +   ++ E LRE
Sbjct: 737 QREAELRRLDDEIERKALL--REQETQAAVEDAEIKALELQAQKEMLQQELLRE 788


>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 180 RATRKLNPLTNNKAMLKLNPYA 245
           RA  K NPL N   ML+LNPYA
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYA 271


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 129 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 233
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +3

Query: 54   TPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIRATRKLN-----PLTNNK 218
            TP++Q   F   + + +N +++RL  S+    + ++ N RVI+++   N        NN+
Sbjct: 802  TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSNGEQWESGNNNE 861

Query: 219  AMLKLNPYAAVLRGKLS*SCAEGRT 293
            + + L       R  LS S  EG T
Sbjct: 862  SNVVLRKKKFGRRKWLSFSMVEGGT 886


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 218 GDAETQSLRGRAERKAILELRRRKNLKA-LADAEKSGLKLYKRNPAMKAEKLRERRRKN 391
           G   + S RGR   ++   +RRR++         +SG +  +R+P+   E+ RER   N
Sbjct: 108 GGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERRRSPSRSPERRRERSFSN 166


>SB_48059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 207 TNNKAMLKLNPYAAVLRGKLS*SCAEGRT*RLLLMPRRVD*SCISETPL*RLRNYARGD 383
           T +   L +NPY    RG ++  C    T RLL+ P RVD +C +   +  L N  RGD
Sbjct: 5   TVHTVRLLINPY----RGDMA--CKTVHTVRLLINPYRVDMACKTVHTVRLLINPYRGD 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,390
Number of Sequences: 59808
Number of extensions: 223944
Number of successful extensions: 929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)