Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30352
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    77   9e-15
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   5.6  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   5.6  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    27   9.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVI 179
           WT+SAF +LD ++G+    S Q KK +++P P  AN++ +R+++S+E+ K +RAP K  +
Sbjct: 251 WTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPV 310

Query: 180 RATRKLNPLTNNKAMLKLNPYAAVLR 257
                 NPL     + KLNPYA++LR
Sbjct: 311 LPKVHRNPLKKRTLLYKLNPYASILR 336


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 108 TNLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM 224
           TN+  LLK DEIR++    N R I+  + LN    +++M
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSM 587


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 108 TNLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM 224
           TN+  LLK DEIR++    N R I+  + LN    +++M
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSM 587


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 108 TNLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM 224
           TN+  LLK DEIR++    N R I+  + LN    +++M
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSM 587


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 557 IYLFIYALGLSSALGLWPWVSRPFQLSASYL--PSSWEE 447
           +Y FI++  L+ ALG    +  P+Q  A Y+    +W E
Sbjct: 162 VYPFIFSFSLAPALGFCRQLLGPYQFGAIYIWFSGNWME 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,473
Number of Sequences: 27780
Number of extensions: 164233
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)