Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30352
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    85   2e-17
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    80   9e-16
At5g56890.1 68418.m07099 protein kinase family protein contains ...    28   5.2  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   5.2  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 39/81 (48%), Positives = 55/81 (67%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIR 182
           WT+SAF +L+ ++GS++ PS++KK + LP+ K  N +L R++ SDEI+ V+    K   R
Sbjct: 258 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKR 317

Query: 183 ATRKLNPLTNNKAMLKLNPYA 245
           A  K NPL N   MLKLNPYA
Sbjct: 318 AVLKKNPLKNLNVMLKLNPYA 338


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 36/81 (44%), Positives = 53/81 (65%)
 Frame = +3

Query: 3   WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKXANTNLTRLLKSDEIRKVLRAPNKRVIR 182
           WT+SAF +L+ ++GS++ PS++KK + LP+ K  N +L R++ SDE++ V+        R
Sbjct: 259 WTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKR 318

Query: 183 ATRKLNPLTNNKAMLKLNPYA 245
           A  K NPL N   M KLNPYA
Sbjct: 319 AVLKKNPLKNLNVMFKLNPYA 339


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 13  PHSAGLTPYSGHGRHHQNKRRTSTCPNRRXPTLTSHVFSSLMRSGRSSVLP 165
           P S    P S H +HHQ +++ +  P      L  H+ S    + + S+ P
Sbjct: 335 PSSPSPPPLSSHHQHHQERKKIADSP--APSPLPPHLISPKKSNRKGSMTP 383


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 494 RPFQLSASYLPSSWEEAGSS*QPASWVS 411
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,603,762
Number of Sequences: 28952
Number of extensions: 162145
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)