Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30351
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.67 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 314 PNSDGFVCDTLAASGYFSCFEAFSQAYCDF 403
           P  +G VC T+ A    +C E F    C+F
Sbjct: 346 PCQNGGVCTTIHAGHKCTCPEGFYGKNCEF 375


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 448 PNSAPGQSEIMAPRFEIAVGLRKGLKTTKISAG 350
           PNS    SE+  P+F++ +G R+      ++ G
Sbjct: 203 PNSVGVSSEVSLPQFKV-LGHRRRAVEISLTTG 234


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 51  IYHLMVMVMSLGGCLPHLSE 110
           +YH+  M  S  GC   ++E
Sbjct: 342 LYHISFMACSSAGCSQKVAE 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,199
Number of Sequences: 336
Number of extensions: 1640
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)