BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30351 (501 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 60 2e-10 SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 60 2e-10 SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.30 SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 0.91 SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 1.2 SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 1.2 SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 2.8 SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 4.8 SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 6.4 >SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosaccharomyces pombe|chr 3|||Manual Length = 99 Score = 59.7 bits (138), Expect = 2e-10 Identities = 30/53 (56%), Positives = 38/53 (71%) Frame = -2 Query: 254 EVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 96 EV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+ R Sbjct: 44 EVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96 Score = 31.1 bits (67), Expect = 0.097 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = -3 Query: 346 KGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLR 203 K +T + + RP+R KG +K + FVR +VR+++ R + +R Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60 >SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Schizosaccharomyces pombe|chr 2|||Manual Length = 99 Score = 59.7 bits (138), Expect = 2e-10 Identities = 30/53 (56%), Positives = 38/53 (71%) Frame = -2 Query: 254 EVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 96 EV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+ R Sbjct: 44 EVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96 Score = 30.7 bits (66), Expect = 0.13 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = -3 Query: 346 KGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLR 203 K +T + + RP+R KG +K + FVR +VR+++ R + +R Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60 >SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 29.5 bits (63), Expect = 0.30 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Frame = +3 Query: 48 FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 224 ++ M + +GG + SEHV K F L V ++ ++ S + LK + S Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175 Query: 225 LL-ILSVSDNFRTKSRTNLECFV*RPFSLAGLI 320 LL I ++ D RT N V S+ G + Sbjct: 176 LLTITNIRDEHRTAPEFNQLSTVMSGISILGWV 208 >SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 689 Score = 27.9 bits (59), Expect = 0.91 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 69 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 194 +V SL G L + A+FFT PL ++VCA + + + ++ Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585 >SPAC21E11.06 |tif224||translation initiation factor eIF2B delta subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 27.5 bits (58), Expect = 1.2 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 133 SVKNLATCSLR*GRQPPRLITITI 62 SVKNL SL+ PPRLIT+ + Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444 >SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1576 Score = 27.5 bits (58), Expect = 1.2 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 251 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 96 ++ HA ++ L+VSKD KRR+ THI + +R LS V Q+R Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164 >SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 819 Score = 26.2 bits (55), Expect = 2.8 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +3 Query: 195 F*HLK*LHSPLLILSVSDNFRTKSRTNLECFV*RPFSLAGLILMALSVIPLRPADILVVL 374 F H +HSP LSVS + ++ S T+ ++ P + A + P + + + Sbjct: 87 FHHPHTIHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASKIQSHEPLNDMAAV 146 Query: 375 RPFRRPTAIS 404 P RP+ +S Sbjct: 147 HPL-RPSHVS 155 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 25.4 bits (53), Expect = 4.8 Identities = 13/39 (33%), Positives = 27/39 (69%) Frame = -2 Query: 215 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 99 +LLK ++ + K K+RL +I K K+EE+++++A++ Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112 >SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 456 Score = 25.0 bits (52), Expect = 6.4 Identities = 8/22 (36%), Positives = 17/22 (77%) Frame = +1 Query: 190 LSFDTLSNSIALFSY*ACPTTS 255 +S+D+LS+ +++ S+ CP T+ Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,614,977 Number of Sequences: 5004 Number of extensions: 29556 Number of successful extensions: 76 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 76 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 198176188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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