Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30351
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              93   2e-19
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   1.6  
SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   3.8  
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   3.8  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  27   6.6  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 44/70 (62%), Positives = 55/70 (78%)
 Frame = -2

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG+SN+ ++       EVVG A YEKR MELL++ KDKRALKF K+RLGTH+R KRKREE
Sbjct: 24  KGASNKRVKFVRDVVREVVGFAPYEKRVMELLRIGKDKRALKFCKKRLGTHVRGKRKREE 83

Query: 122 LSNVLAQMRK 93
           +++VLA MRK
Sbjct: 84  ITSVLAAMRK 93



 Score = 35.1 bits (77), Expect = 0.033
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -3

Query: 400 IAVGLRKGLKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRG 221
           +AVGL+KG K TK             + +P+R KG   K  KFVRD+VR++       + 
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 220 LWSYLRCQK 194
           +   LR  K
Sbjct: 51  VMELLRIGK 59


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 455 PRAEFGTRSVRNHGSSF*NRSRPAKRPQ 372
           PR  FG    RN+G  F   +RP K PQ
Sbjct: 659 PRVVFGLNGFRNNGGLFNALNRPIKNPQ 686


>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 323 DGFVCDTLAASGYFSCFEAFSQAYCDF 403
           DG  C T      + CFE+  + YCDF
Sbjct: 639 DGDCCFTSIMKQIYRCFESNDEEYCDF 665


>SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -3

Query: 418 MAPRFEIAVGLRKGLKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVR---DLVRKL 248
           M P  +  +  +K L   +  +GRK      +  R A  K L T H+++V    D+  K 
Sbjct: 492 MTPNVKRMIKRKKRLYNLQRKSGRKDHKANFMAARRAVKKALNTAHNEYVMGLLDVNEKE 551

Query: 247 S--DTLNMRRGLWSYLR 203
           S  +  N  R  W Y++
Sbjct: 552 SNVERFNTGRKFWKYIK 568


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 200 SKDKRALKFLKRRLGTHIRAKRKREELSN 114
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 313 PARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLRCQK 194
           P RLK    +  K +    RKLS T  +++   +YL C+K
Sbjct: 764 PDRLKNNNQEEPKPIHRSPRKLSGTFGVKKSPLTYLFCEK 803


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 388 LRKGLKTTKISAGRKGITDKAIRIRPARLKGLQTKH---SKFVRDLVRKL 248
           +RKGLKT +  A RK       R +P R   L + H      V  +VRKL
Sbjct: 716 VRKGLKTRRAKALRKTKESTTSRTKPRRSMVLTSMHFGEQDIVVSVVRKL 765


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,565,804
Number of Sequences: 59808
Number of extensions: 238534
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)