Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30351
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    82   2e-16
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      29   1.4  
AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical...    29   2.5  
Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    27   5.8  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = -2

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG +++  ++      E+ G A YE+R +E+L++SKDKRALKFLKRR+GTH RAK KREE
Sbjct: 32  KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 91

Query: 122 LSNVLAQMRK 93
           L NV+   RK
Sbjct: 92  LQNVIIAQRK 101



 Score = 31.5 bits (68), Expect = 0.36
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -3

Query: 400 IAVGLRKGLKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRG 221
           +AVGL KG   T++           ++ R  R KG+ +K +K VR+LVR+++      R 
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 220 LWSYLRCQK 194
           +   LR  K
Sbjct: 59  VLEMLRISK 67


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 437 TRSVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*F 261
           +RS RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     F
Sbjct: 411 SRSSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTF 470

Query: 260 S 258
           S
Sbjct: 471 S 471


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 437 TRSVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*F 261
           +RS RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     F
Sbjct: 411 SRSSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTF 470

Query: 260 S 258
           S
Sbjct: 471 S 471


>AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical
           protein Y59A8B.22 protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = -3

Query: 451 VPNSAPGQSEIMAPRFEIAVGLRKG----LKTTKISAGRKGITDKAIRIRPARLKGLQTK 284
           +P +   QSE    +FE   GL K     LKT ++ A +K +TD         L  L+ K
Sbjct: 483 IPKAEAEQSEA-CKKFEEITGLSKNELKELKTRRVQAFKKNLTD---------LAELEIK 532

Query: 283 HSK----FVRDLVRKLSDT 239
           HSK     +RD+V +L  +
Sbjct: 533 HSKAEISLLRDVVERLKSS 551


>Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK643.3b protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 306 LAGLILMALSVIPLRPA-DILVVLRPFR-RPTAISKRGAMIS 425
           LAGL+  + SVI L PA  +L +LRP R +P  I  R  +IS
Sbjct: 224 LAGLLTYSASVIFLIPAVFLLTLLRPIRCQPMFILHRHLLIS 265


>Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical
           protein ZK643.3a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 306 LAGLILMALSVIPLRPA-DILVVLRPFR-RPTAISKRGAMIS 425
           LAGL+  + SVI L PA  +L +LRP R +P  I  R  +IS
Sbjct: 224 LAGLLTYSASVIFLIPAVFLLTLLRPIRCQPMFILHRHLLIS 265


>U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical
           protein R08C7.9 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 115 LLSSSRFLLARMCVPNRRFKNFRARLSFDTLSNSIALFSY*ACPTTSVLNHGQTWSVSF 291
           L S+S  L A+M  P R F   RA  S + +   I +       TT VLNH  ++   F
Sbjct: 280 LESASLRLDAQMAPPEREFVYIRANGSKEHIRGEIVVRRKDGTMTTIVLNHENSYFKMF 338


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEP 155


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEP 155


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 107 RAQHGADSKREGGSGSGNRGRPTKEP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,977,079
Number of Sequences: 27780
Number of extensions: 167310
Number of successful extensions: 441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)