Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30350
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   2.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   3.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 282 SFPSYPTSAPTGLMSCGISMEKTRLFMKSPFIELLNPITCKV 157
           +FP   T    GL   G+  E T++ + S     L   TC++
Sbjct: 16  AFPGGRTLVEKGLRKQGVPREATKITLSSLAKGSLKQYTCEL 57


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 496 PRLINFSPRDNQVCRLPITNISY 428
           P  + + P D Q+C + I +  Y
Sbjct: 168 PMNLQYLPMDRQLCHIEIESFGY 190


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 71  DPSNGCNPGWPLRTFLAAL 127
           +PS G  PG P   FL  L
Sbjct: 683 NPSTGSKPGKPRSAFLTDL 701


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 347 NMTGSIEVDILASLGPKLPLSFLSHPTQPAL 255
           N  G+   D+  SLGP    SF+++ T   L
Sbjct: 352 NEQGNKLADLYKSLGPDSVYSFINNLTDRKL 382


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 347 NMTGSIEVDILASLGPKLPLSFLSHPTQPAL 255
           N  G+   D+  SLGP    SF+++ T   L
Sbjct: 244 NEQGNKLADLYKSLGPDSVYSFINNLTDRKL 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,658
Number of Sequences: 336
Number of extensions: 3341
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)