Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30350
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...   114   8e-27
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    32   0.071
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    31   0.094
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    28   0.88 
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.7  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   3.5  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    25   6.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   6.2  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.2  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   8.2  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score =  114 bits (275), Expect = 8e-27
 Identities = 49/80 (61%), Positives = 66/80 (82%)
 Frame = +1

Query: 268 VGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVPDLNVGVMKDTKCLLL 447
           VGWERN KG  GPR+ N+ST +DP +L++++S LN+ LM+WRLVP L++  ++++KCLLL
Sbjct: 282 VGWERNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVPQLDLDRIQNSKCLLL 341

Query: 448 GAGTLGCHVARNLLALGFRH 507
           GAGTLGC VARNLL+ G RH
Sbjct: 342 GAGTLGCGVARNLLSWGVRH 361



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 506 INFRDNGKVSYSNPTRQVLFNYQDC 580
           + F D   VSYSNP RQ LF ++DC
Sbjct: 362 VTFVDYSTVSYSNPVRQSLFTFEDC 386


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 424 KDTKCLLLGAGTLGCHVARNLLALGFR 504
           K  K LL+GAG +GC + +NLL  G +
Sbjct: 24  KSAKVLLVGAGGIGCELLKNLLMSGVK 50


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 430 TKCLLLGAGTLGCHVARNLLALGFR 504
           +K L++GAG LGC + ++L   GFR
Sbjct: 45  SKILIIGAGGLGCEILKDLALSGFR 69


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 168 TCKVDFAKSGRYSNSAAKNVLSGQPGLHP 82
           T K D +++ R  N  AK +++GQP LHP
Sbjct: 679 TSKNDMSRNQR--NKYAKEIMTGQPTLHP 705


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 318 ISEPGSKIAFIVSFP-SYPTSAPTGLMSCGI 229
           +S P S +   + FP  YP SAPT L + GI
Sbjct: 34  LSIPDSSVRLNIQFPLDYPNSAPTVLDAYGI 64


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 234  GISMEKTRLFMKSPFIELLNPITCKVDFAKSGR 136
            GIS+ +    + +PF      ITC +D  K GR
Sbjct: 1029 GISLSEAEASVAAPFTSKWFEITCVLDVIKDGR 1061


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 421 MKDTKCLLLGAGTLGCHVARNLLALG 498
           +K +  L++GAG LGC   + L+A G
Sbjct: 41  LKRSSVLVIGAGGLGCPAMQYLVAAG 66


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 339 RIHRGRHISEPGSKIAFIVSFPSYPTSAPTGLMSC 235
           RI R     +PG+ ++F+V         PT L SC
Sbjct: 413 RIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESC 447


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 140 PDLAKSTLQVIGLRSSMNGDFIKSLVFSIEIPQDIKPV 253
           P  A S    +G   S NG+  +SL  S E+P   KP+
Sbjct: 202 PRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAKPM 239


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 446 NNKHFVSFITPTFRSGTRRHFINFIFRSDDVSANMTGSIEVDILASLGPKLPLSFLSH 273
           N ++ VSF+  T  +      +N+I +   ++  + G+    + + + P LPL +L+H
Sbjct: 129 NTQYSVSFLF-TIMASVLISVLNYISQKIFLNGLILGNSHNVVTSLVAPPLPLQYLAH 185


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 280 RNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVP 402
           R + GN  P   + +   D V +A TSS  N+++   RL+P
Sbjct: 613 RLNGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLP 653


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 380 NFIFRSDDVSANMTGSIEVDILASLGPKLPLSFLSHPTQPALQ 252
           N ++  DDVS N    + ++       +L      HPT P  Q
Sbjct: 75  NVVYADDDVSRNALFHLIMESPTEFSEELEYQTKPHPTVPTCQ 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,018
Number of Sequences: 5004
Number of extensions: 58128
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)