Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30350
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 38 0.006
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 34 0.073
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 31 0.90
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 30 1.2
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 30 1.2
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 2.1
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 29 2.7
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245... 29 3.6
02_01_0408 - 2972240-2975380 29 3.6
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 27 8.4
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 27 8.4
02_05_0795 - 31792231-31794780 27 8.4
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 27 8.4
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 406 LNVGVMKDTKCLLLGAGTLGCHVARNLL 489
+N+ + +CLLLGAGTLGC VAR L+
Sbjct: 634 VNLEKLSSARCLLLGAGTLGCDVARILM 661
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 34.3 bits (75), Expect = 0.073
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 11 DVNSANCIDLDLVSTYFVF-ADPSNGCNPGWPLRTFLAALLEYRPDL 148
D S + I VST + F AD ++G +PG P R F+ L E+ PD+
Sbjct: 155 DQRSNSLIQFREVSTKYQFSADVASGSSPGLPGRVFIGRLPEWSPDV 201
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 475 PRDNQVCRLPITNISYLSSHLHSDQVLDAISSTLYSD 365
PR ++ L +SH+H V+DAIS +YSD
Sbjct: 749 PRRRKIQELSSVQKENEASHIHMQNVMDAISRLVYSD 785
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 304 PRLANMSTSMDPVILADTSSDLNIKLMKWRLV 399
PR+A++ S P+IL+D +D+ ++ W V
Sbjct: 296 PRIASVLLSFPPIILSDVENDIKPRINAWEKV 327
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 421 MKDTKCLLLGAGTLGCHVARNLLALGFR 504
+K K L++GAG +GC + + L GFR
Sbjct: 15 VKAAKVLMVGAGGIGCELLKTLALSGFR 42
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 442 LLGAGTLGCHVARNLLALGFRHKL 513
LLG GT CH NLLA F +L
Sbjct: 373 LLGTGTTRCHENMNLLATSFNERL 396
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 421 MKDTKCLLLGAGTLGCHVARNLLALG 498
M+D ++G+G LGC +NL +G
Sbjct: 589 MRDANVFVVGSGALGCEFLKNLALMG 614
>02_05_1264 +
35321972-35322448,35323022-35323252,35323903-35324565,
35324698-35324806,35324965-35325383
Length = 632
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 71 DPSNGCNPGWPLRTF 115
DPSNG N WPLR +
Sbjct: 317 DPSNGDNTNWPLRAY 331
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 253 WSAGWVGWERNDKGNFGPRLANMSTSMDPVILADTSSDL 369
+ GWV R D +FG L + T PV + TS +L
Sbjct: 944 YGQGWVATLRGDVYSFGVVLLELLTGRRPVSILSTSEEL 982
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 421 MKDTKCLLLGAGTLGCHVARNLLALG 498
++ K ++G+G LGC +NL +G
Sbjct: 464 LEQAKIFMVGSGALGCEFLKNLALMG 489
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 421 MKDTKCLLLGAGTLGCHVARNLLALG 498
++ K ++G+G LGC +NL +G
Sbjct: 588 LEQAKIFMVGSGALGCEFLKNLALMG 613
>02_05_0795 - 31792231-31794780
Length = 849
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 439 LLLGAGTLGCHVARNLLALGFR 504
L++GAG G AR+L++LGF+
Sbjct: 274 LIVGAGFAGLAAARHLMSLGFK 295
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 400 PDLNVGVMKDTKCLLLGAGTLGCHVARNLLALGFRH 507
P L + + L++GAG LGC + ++L GF++
Sbjct: 37 PGLRDSLGSLVEVLVVGAGGLGCELLKDLALSGFKN 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,638,394
Number of Sequences: 37544
Number of extensions: 359594
Number of successful extensions: 849
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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