Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30350
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   5e-23
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         32   0.30 
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_7189| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_39848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   6.5  
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.5  
SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)           27   8.6  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 27   8.6  
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     27   8.6  
SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)                   27   8.6  
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)             27   8.6  
SB_9252| Best HMM Match : HATPase_c (HMM E-Value=2.1)                  27   8.6  

>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score =  104 bits (250), Expect = 5e-23
 Identities = 44/77 (57%), Positives = 62/77 (80%)
 Frame = +1

Query: 265 WVGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVPDLNVGVMKDTKCLL 444
           ++GWE+N K   GPR  ++S +MDP  LA++S DLN+KLM+WRL+P+L++ V+  T+CLL
Sbjct: 532 YIGWEKNKKQKLGPRSVDLSATMDPEKLAESSVDLNLKLMRWRLLPELDLDVVSSTRCLL 591

Query: 445 LGAGTLGCHVARNLLAL 495
           LGAGTLGC+VAR L+ L
Sbjct: 592 LGAGTLGCNVARCLMTL 608



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 41  DLVSTYFVFADPSN-GCNPGWPLRTFLAALLEYRPDLAKSTLQVIGLRSSMNG---DFIK 208
           DL      FADP+    NPGWPLR FL   L +        L+V+  R    G   +   
Sbjct: 455 DLFQLMVGFADPTTLPSNPGWPLRNFL-LFLAFHWGTKIDDLKVLCFRDRFRGGRREIDH 513

Query: 209 SLVFSIEIP 235
           S+V  + +P
Sbjct: 514 SIVLDVTLP 522


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +1

Query: 421 MKDTKCLLLGAGTLGCHVARNLLALGFRH 507
           + ++K L++GAG +GC + +NL+  GF++
Sbjct: 21  VNNSKILVVGAGGIGCELLKNLVLTGFKN 49


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +1

Query: 421 MKDTKCLLLGAGTLGCHVARNLLALGFRH 507
           + ++K L++GAG +GC + +NL+  GF++
Sbjct: 21  VNNSKILVVGAGGIGCELLKNLVLTGFKN 49


>SB_7189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 451 LPITNISYLSSHLHSDQVLDAISSTLYSDLMTYLPI*QDP 332
           +PI N+  + SH HS Q L      L +DLM Y  I   P
Sbjct: 211 MPIVNLIDMQSHKHSHQALLRSEPGLGNDLMLYPDIAGSP 250


>SB_39848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 62  VFADPSNGCNPGWPL 106
           +F DPSN C+PG PL
Sbjct: 10  MFTDPSNSCSPGDPL 24


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 482 FLAT*QPSVPAPNNKHFVSFITPTFRSGT-RRHFINFIFRSDDVS 351
           +L    P+  A  NK    F TP    GT RRH  NFI  S+ VS
Sbjct: 180 YLQLRDPTCHAYENKTHYIFKTPLTGCGTTRRHTKNFIVYSNKVS 224


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 437 HFVSFITPTFRSGTRRHFINFIFRSD 360
           HF+SF+T T  +  RR F NF + S+
Sbjct: 543 HFLSFVTTTAHALRRRCFANFYYISN 568


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 408 ECR-CDERYEMFVIGSRHTWLSRGEK 482
           ECR CD+++  F    RH W   GEK
Sbjct: 443 ECRYCDKQFADFSSRKRHEWQHTGEK 468


>SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = -3

Query: 446 NNKHFVSFITPT---FRSGTRRHFINFI--FRSDDVSANMTGSIEVDILASLGPKLPLSF 282
           NN ++VS  +     F    RR+ IN    + SDD   NM   ++ +    +    P   
Sbjct: 45  NNNNYVSDESDDLVPFDHDDRRNIINNNNNYESDDSDTNMLSDLDDESDEEVNRDAPTPR 104

Query: 281 LSHPTQPALQLA*CPVEFQWRKL 213
             HP  P +QL   P +   R L
Sbjct: 105 TPHPPLPVIQLNPPPAQLLERSL 127


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 445 ITNISYLSSHLHSDQVLDAISSTLYSDLMTYLPI*Q 338
           I  I+Y   H   +Q L +I+ +LY+D + Y P+ Q
Sbjct: 398 IDEITYFPLHKFVNQFLLSIADSLYADAIHYWPLDQ 433


>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
          Length = 614

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 363 RSEYKVDEMASST*SECRCDERYEMFVIGSRHTWLSRGEKFISLGFPS*TFVTTVKCHIQ 542
           +++ K D++     + C      E  V  SRH   + G +F S GFP   +    +C ++
Sbjct: 215 KADIKSDDVVKCD-TSCYAKCNTESNVCPSRHIKYTMGGEFFSPGFPV-AYPANSRCRVK 272

Query: 543 IR-PDKF 560
           I  PD +
Sbjct: 273 ITIPDNY 279


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 523  VVTKVYDGNPRLINFSPRDNQ---VCRLPITNISYLSSHLHSDQVLDAISS 380
            VV+ V DG+  +++ S +D     +C+ P   ++ ++S+L S Q  D ISS
Sbjct: 1140 VVSTVKDGDTPVVS-SVKDGDTSVICQAPTKGMTNIASNLPSKQETDPISS 1189


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 505 DGNPRLINFSPRDNQVCRLPITNISYLSSHLHSDQVLD 392
           D   + +N+S RDN +C+L   N +    HL  +Q  D
Sbjct: 317 DKRCKSVNYSARDNGICQL--NNATEFDEHLSINQTWD 352


>SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)
          Length = 257

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 505 DGNPRLINFSPRDNQVCRLPITNISYLSSHLHSDQVLD 392
           D   + +N+S RDN +C+L   N +    HL  +Q  D
Sbjct: 211 DKRCKSVNYSARDNGICQL--NNATEFDGHLSINQTWD 246


>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 352 DTSSDLNIKLMKWRLVPDLNVGVMKDTKCLLLGAGTLG 465
           DT+ D   K +KWR++ D N     +     LGA T G
Sbjct: 343 DTARDYKPKGVKWRVIGDENYVECSNRGACCLGASTPG 380


>SB_9252| Best HMM Match : HATPase_c (HMM E-Value=2.1)
          Length = 324

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 397 VPDLNVGVMKDTKCLLL---GAGTLGCHVARNLLALGFRHKLS*QR*SVIFKSDQTSSVQ 567
           VP  N+G + D   L+    G  +L   VA N+L +  R      R  V+F S    S++
Sbjct: 53  VPKENIGTVIDGMSLVQIINGDRSLFGQVANNILGMALREGAMSNRIDVVFDSYNELSIK 112

Query: 568 LS-RLSRG 588
            S RL RG
Sbjct: 113 SSERLLRG 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,357,395
Number of Sequences: 59808
Number of extensions: 423825
Number of successful extensions: 1080
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)