Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30350
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 85 4e-17
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 85 4e-17
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 37 0.009
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 32 0.26
AF016685-15|AAG24139.2| 321|Caenorhabditis elegans Hypothetical... 29 2.4
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 29 2.4
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81112-5|CAB03276.1| 245|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81027-4|CAB02689.1| 245|Caenorhabditis elegans Hypothetical pr... 28 4.3
U61955-9|AAC24409.3| 371|Caenorhabditis elegans Hypothetical pr... 28 4.3
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 28 4.3
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 28 4.3
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 27 7.5
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 9.9
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 9.9
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.9
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 9.9
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 9.9
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 9.9
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 85.0 bits (201), Expect = 4e-17
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +1
Query: 268 VGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVPDLNVGVMKDTKCLLL 447
VGWERN P ++S DP IL + S DLN+ L+KWRL PD+ + K L+L
Sbjct: 271 VGWERNANDKLQPISVDLSKEFDPKILMERSVDLNLSLIKWRLHPDIQLERYSQLKVLIL 330
Query: 448 GAGTLGCHVARNLLALGFRH 507
GAGTLGC++AR L+ G RH
Sbjct: 331 GAGTLGCNIARCLIGWGVRH 350
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 506 INFRDNGKVSYSNPTRQVLFNYQD 577
I+F DN VSY+NP RQ L ++D
Sbjct: 351 ISFLDNSTVSYNNPVRQSLSEFED 374
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 85.0 bits (201), Expect = 4e-17
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +1
Query: 268 VGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVPDLNVGVMKDTKCLLL 447
VGWERN P ++S DP IL + S DLN+ L+KWRL PD+ + K L+L
Sbjct: 271 VGWERNANDKLQPISVDLSKEFDPKILMERSVDLNLSLIKWRLHPDIQLERYSQLKVLIL 330
Query: 448 GAGTLGCHVARNLLALGFRH 507
GAGTLGC++AR L+ G RH
Sbjct: 331 GAGTLGCNIARCLIGWGVRH 350
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 506 INFRDNGKVSYSNPTRQVLFNYQD 577
I+F DN VSY+NP RQ L ++D
Sbjct: 351 ISFLDNSTVSYNNPVRQSLSEFED 374
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 388 WRLVPDLNVGVMKDTKCLLLGAGTLGCHVARNLLALGFR 504
W + N +++TK L++GAG LGC + +NL GFR
Sbjct: 29 WFVPGPENFEALQNTKILVIGAGGLGCELLKNLALSGFR 67
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 430 TKCLLLGAGTLGCHVARNLLALGFR 504
+K L++GAG +GC + +NL GFR
Sbjct: 14 SKILVIGAGGIGCELLKNLAVTGFR 38
>AF016685-15|AAG24139.2| 321|Caenorhabditis elegans Hypothetical
protein F59E11.2 protein.
Length = 321
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 233 PQDIKPVGALVG*DGKETIKAILDPGSLICLPRWILSYWQ 352
PQ+I+ + ++G GKE + + P I LP+W++ WQ
Sbjct: 281 PQNIRSIRTILGTMGKEEVAKYIPP--QIKLPKWVI--WQ 316
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Frame = +1
Query: 241 HQASWSAGW------VGWERNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLV- 399
H SW+ GW +G N + T D + A S + N+K+ W L
Sbjct: 108 HPESWNPGWTVSAILIGLHSFMNENSPAAGSIAGTPQDQRMYAAASKEFNVKVYNWNLAG 167
Query: 400 -PDLNVGVMKDTKCLLLGAG 456
P N + +D + LG G
Sbjct: 168 NPHCNFFLTRDEEKWFLGHG 187
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 280 RNDKGNFGPRLANMSTSMDPVILADTSSDLNIKLMKWRLVPDLNVGVM---KDTKCLLLG 450
+N +G G + M TS + + S +L K + R + L M + L+ G
Sbjct: 76 KNTEGQDGEK---MDTSNNAGGVGGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISG 132
Query: 451 AGTLGCHVARNLLALGFRH 507
G++G +A+NL+ G RH
Sbjct: 133 LGSVGVEIAKNLILGGVRH 151
>Z81112-5|CAB03276.1| 245|Caenorhabditis elegans Hypothetical
protein AH10.2 protein.
Length = 245
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Frame = -1
Query: 502 GNPRLINFSPRDNQVCRLPIT---NISYLSS---HLHSDQVLDAISSTLYSD 365
GNPR ++F P+D+Q L I+ N+S L++ H++S++ L+ + L+SD
Sbjct: 52 GNPRTLSFHPKDHQE-TLEISFSNNVSDLTTVEYHMNSNE-LNTYQTILFSD 101
>Z81027-4|CAB02689.1| 245|Caenorhabditis elegans Hypothetical
protein AH10.2 protein.
Length = 245
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Frame = -1
Query: 502 GNPRLINFSPRDNQVCRLPIT---NISYLSS---HLHSDQVLDAISSTLYSD 365
GNPR ++F P+D+Q L I+ N+S L++ H++S++ L+ + L+SD
Sbjct: 52 GNPRTLSFHPKDHQE-TLEISFSNNVSDLTTVEYHMNSNE-LNTYQTILFSD 101
>U61955-9|AAC24409.3| 371|Caenorhabditis elegans Hypothetical
protein M03D4.6 protein.
Length = 371
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +2
Query: 89 NPGWPLRTFLAALLEYRPDLAKSTLQVIGLRSSMNGDFIKSLVFSIEIPQDIKPVGALVG 268
N G L +A R D+ + ++ +GL+S+ DFI ++ S+E+ + P +
Sbjct: 4 NEGKDLVKMASASPFIRHDVTERLVEEVGLKSNYFNDFI-TVGESVEVDGIVLPTPRIFF 62
Query: 269 *DGKET 286
DG+ET
Sbjct: 63 RDGQET 68
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 487 INFSPRDNQVCRLPITNISYLSSHLHSDQVLDAISSTLYSDLMTYLP 347
I + P D+QVC L + +Y L + + S L DL TY P
Sbjct: 96 ITYFPFDDQVCYLKFGSWTYHGLALDLSIIAEEDDSELSIDLSTYTP 142
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 394 LVPDLNVGVMKDTK---CLLLGAGTLGCHVARNLLALG 498
LV D V K+ K L++GAG LGC VA L A G
Sbjct: 23 LVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAG 60
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 421 MKDTKCLLLGAGTLGCHVARNLLALGFRH 507
++ L+ G G++G +A+NL+ G RH
Sbjct: 38 LRTASVLISGLGSVGVEIAKNLILGGVRH 66
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 123 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 197 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 616 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 652
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 123 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 123 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 443 NKHFVSFITPTFRSGTRRHFINFIFRSDDVS--ANMT 339
NK FV F+ + + IN FRS DVS AN T
Sbjct: 197 NKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233
>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
protein K10B4.1 protein.
Length = 1210
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -2
Query: 177 NPITCKVDFAK-----SGRYSNSAAKNVLSGQPGLHPLL 76
+P TC VD A S Y N A + +L G G H ++
Sbjct: 1001 DPATCVVDLASDFLNMSKIYDNEAVEQILGGMHGKHQMM 1039
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,678
Number of Sequences: 27780
Number of extensions: 320717
Number of successful extensions: 788
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -