Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30350
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 496 PRLINFSPRDNQVCRLPITNISY 428
           P  + + P D Q+C + I +  Y
Sbjct: 139 PMNLQYFPMDRQLCHIEIESFGY 161


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 496 PRLINFSPRDNQVCRLPITNISY 428
           P  + + P D Q+C + I +  Y
Sbjct: 139 PMNLQYFPMDRQLCHIEIESFGY 161


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 496 PRLINFSPRDNQVCRLPITNISY 428
           P  + + P D Q+C + I +  Y
Sbjct: 78  PMNLQYFPMDRQLCHIEIESFGY 100


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 475 PRDNQVCRLPITNISYLSSHL 413
           P D Q+C + I ++S+ +  L
Sbjct: 140 PHDTQICSMMIESLSHTTQDL 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 429 YEMFVIGSRHTWLSRGEKFISLGFPS*TFVTTVKCHI----QIRPDKF 560
           Y+ F +  RH    RG+  + +G     F T+V+  I     +R +KF
Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWDILEVPAVRNEKF 219


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 249 GLMSCGISMEKTRLFMKS--PFIE 184
           GL+S GI + K R FM+   PF E
Sbjct: 132 GLLSGGIILRKKREFMQKIWPFKE 155


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 227 EIPQDIKPVGALVG*DGKETIKAILDP 307
           E+P D+     +V  DG ET K    P
Sbjct: 569 EVPSDVLYNRLVVSEDGSETFKYSSQP 595


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 374 IFRSDDVSANMTGSIEVDILASLGP 300
           ++ S++ S+ +TG+   D+L S+ P
Sbjct: 102 VYVSNEPSSAITGNNVKDVLVSIDP 126


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 132 SNSAAKNVLSGQPGLHPLLGSAKTKYVLTRSRSMQLALLTSKTS 1
           +N    + L G  GLH L  SA T        +   ALL+ + S
Sbjct: 129 TNQTGLHGLHGLHGLHGLSSSAPTGSSCGPGAAAAAALLSKRRS 172


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 227 EIPQDIKPVGALVG*DGKETIKAILDP 307
           E+P D+     +V  DG ET K    P
Sbjct: 569 EVPSDVLYNRLVVSEDGSETFKYSSQP 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,837
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)