Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30349
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    27   3.6  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.8  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.4  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.4  

>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -2

Query: 702 NKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNVLTKQELAF 547
           NK+   S SE K S     P     HTISP +     KLYT ++  K E  F
Sbjct: 426 NKEHSTSKSEEKSSELLKYPN---GHTISPGIIALSTKLYTGSIFPKCEKDF 474


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 452 ISDIHYYCILHVLHNCVSILLLFSILL-ACGAWKANS 559
           +S   +  + H+L NCV+I    SI++   G WKA S
Sbjct: 174 VSIFSHQNLAHLLVNCVAIYSFLSIVVYKFGVWKALS 210


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +2

Query: 500 VSILLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTIGLIVWEALTAGWI 652
           + I  ++S +  C  + ++   V    + + FH+ LT+ L+       G+I
Sbjct: 134 LKITCVYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYI 184


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 143 QKYICLFCNFKILYVVSERLKQNILNHLEFQMTLLSRYKKVFVLFSTSRGKRCLRINC-- 316
           +KYI +     ILY   ++    IL   + +     +Y+ +F  F ++ G+R  ++    
Sbjct: 248 KKYILMESCLGILYKNPKKANFEILERFQGKALDGQKYEPLFPYFKSTFGERAFKLYSAD 307

Query: 317 YYNSCSGIGV 346
           Y    SG G+
Sbjct: 308 YVEEGSGTGI 317


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 615 PIVRNRWKKLYTKNVLTKQELAFQAPQASKILNKSKIE 502
           P+  N   K YT+    KQE+  Q  QAS    +S  E
Sbjct: 442 PVTHNILAKHYTQATKAKQEIEDQQRQASAAREESHTE 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,103
Number of Sequences: 5004
Number of extensions: 60930
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)