Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30349
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1010 - 10215625-10216335,10216372-10216473 31 0.94
07_03_0497 + 18777377-18777592,18777691-18778512 29 3.8
01_07_0372 + 43134296-43134910 29 3.8
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 28 6.6
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 28 6.6
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 6.6
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 28 6.6
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120... 28 8.8
06_01_0165 + 1288107-1290476 28 8.8
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 459 SLICRGRNRRFFQGSGSHGTSCRPCSHSPGYLP 361
S C G +R G GS G C C+ SPGY P
Sbjct: 24 SCCCCGSSRIQELGVGSGGEGCFCCASSPGYTP 56
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 604 PYNRTYCVGGFNSWLDTTRTDFALRCA 684
P N T CVG + WL RTD A A
Sbjct: 5 PENSTVCVGSTDGWLALHRTDAATTAA 31
>01_07_0372 + 43134296-43134910
Length = 204
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 729 MASIRYLTPNKQTMRSTSESKISPSCIQPAVKASHTISPI-VRNRWKKLYTKNVLTKQEL 553
MAS+ NK+ + + S S S + H P N KK TK +KQ+L
Sbjct: 1 MASVVLKDLNKRLLGLSCSSAASTSIVLSGHSPPHLRDPARTSNSSKKKKTKANKSKQQL 60
Query: 552 AFQAPQASKILNKSKIE 502
A + +LN S+++
Sbjct: 61 VSPASSSRFLLNSSRMQ 77
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = -2
Query: 702 NKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNVLTKQELAFQAPQASKI 523
N ST+ IS + I+ + + K+Y K V ++ELAF+ +
Sbjct: 264 NSSYNSSTTPVDISLAAIEACTDGFSESKKVGSGAYGKVY-KGVYNEEELAFKKIDGLAV 322
Query: 522 LNKSKIETQLCRTCNIQ 472
LN+ + + +L ++Q
Sbjct: 323 LNEDQFKNELKHLMSVQ 339
>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 161 FCNFKILYVVSERLKQNILNHLEFQMTLLSRYKKVFVLFSTSRG 292
+C F + RLK + + ++MTL R+++++ +T RG
Sbjct: 284 YCPFMFIRDGERRLKDQVNRCMFYEMTLEQRWEEIYSCDNTHRG 327
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 717 RYLTPNKQTMRSTSESKISPSCIQPAVKAS 628
R + PNK T + + ++ PSCI+P+ ++S
Sbjct: 14 RSMLPNKVTALNPNAAEFVPSCIRPSFESS 43
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 243 YYQDTRKFLFCFPLRVGNVVF 305
YY +T KF F + LRVGNV+F
Sbjct: 292 YYANTMKF-FLYRLRVGNVLF 311
>07_03_1606 +
28111158-28111328,28111431-28111549,28111984-28112024,
28112654-28112713,28112812-28112858,28112939-28113133,
28113236-28113282,28113363-28113429,28113521-28113621,
28113725-28113826,28113904-28114042,28114120-28114182,
28114323-28114406,28114981-28115295
Length = 516
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 556 FLFSEYILRV*FLPSVPYNRTYCVGGFNSW 645
F+FSE + + LP + +N +C+ F SW
Sbjct: 77 FVFSEDLFFIYLLPPIIFNAGFCLLEFYSW 106
>06_01_0165 + 1288107-1290476
Length = 789
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 464 HYYCILHVLHNCVSILLLFSILLAC---GAWKANSCLVSTFFVYSFFHLF 604
HY L+ V + + F ++LA W+ C++S +F+ S HL+
Sbjct: 429 HYISTPPALYTTVDLAITFLLVLANIYEEIWEFIVCILSNWFMVSLIHLY 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,908,575
Number of Sequences: 37544
Number of extensions: 344496
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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