Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30349
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.034
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      33   0.18 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            33   0.24 
SB_14775| Best HMM Match : rve (HMM E-Value=6.6e-15)                   31   0.73 
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    29   2.9  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   29   5.1  
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         28   9.0  
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                28   9.0  

>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 506 ILLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTI 613
           I+ L + L  CGAWK N C++  FF +    L L I
Sbjct: 63  IIALVAFLGCCGAWKENKCMLICFFAFLLLLLILEI 98


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 506 ILLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTIGLIV 625
           I+ + S     GAWK N C++ TFFV     L L I   V
Sbjct: 65  IIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAV 104


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 506 ILLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTIGLIV 625
           I+ + +    CGAWK N C++  FF+     L L I   V
Sbjct: 416 IITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAV 455


>SB_14775| Best HMM Match : rve (HMM E-Value=6.6e-15)
          Length = 167

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 137 CVQKYICLFCNFKILYVVSERLKQNILNHLEFQMTLLSRYKKVFVLFSTSRGKRCLRINC 316
           C+ KYI +  ++   Y  +  LK     H+   +  LSR+  V     T +G  C   NC
Sbjct: 27  CINKYILVIVDYATRYPEAVPLKSIDAEHVAEDLVKLSRF-GVPEEILTDQGSNCQGSNC 85

Query: 317 YY-NSC--SGIGVQSIR 358
               SC     GV+S+R
Sbjct: 86  LICQSCWLRNFGVKSLR 102


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 503 SILLLFSILLACGAWKANSCLVSTFFVYSFFHLFLTI 613
           + + L S    CGA K + CL++TFF   F  L + I
Sbjct: 334 AFIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEI 370


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = -2

Query: 711  LTPNKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNVLTKQELAFQAPQA 532
            +TPN ++    +    S S I P VK+S  I+PIV++    L      +K+ +A   P  
Sbjct: 1041 ITPNVKSSSEITPIVKSSSEITPIVKSSSEITPIVKSSSSLLD-----SKKPVAAIVPDI 1095

Query: 531  SKILNKSKIETQLCRTC 481
            S    KS ++T+   +C
Sbjct: 1096 STTDVKSNVDTRGHESC 1112


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/80 (28%), Positives = 42/80 (52%)
 Frame = -2

Query: 726 ASIRYLTPNKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNVLTKQELAF 547
           AS R  TP+K  +        +P  + P+++   TI+PI + R K+ YT++   K  L+F
Sbjct: 595 ASKRCPTPSKAFLIGPK----APFRLYPSLRK--TIAPITKVRHKRQYTQDKSIKSRLSF 648

Query: 546 QAPQASKILNKSKIETQLCR 487
               ++ IL  S++E  + +
Sbjct: 649 YT--STVILEISRLEVDVSK 666


>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 714 YLTPNKQTMRSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKNV 571
           Y  PN+   +    SKI+P+ I  A  +   I+  V +  KK YT+ V
Sbjct: 478 YRPPNRYPYKPLKRSKITPTVINVATSSQTNITD-VNSISKKQYTEQV 524


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 476 ILHVLHNCVSILLLFSILLACGAWKANSCLVSTFF 580
           IL ++   V++++ F  L  CGA K + C++ T+F
Sbjct: 60  ILCIVIGIVTVIVAF--LACCGALKESQCMLGTYF 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,668,733
Number of Sequences: 59808
Number of extensions: 432361
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)