BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30349 (733 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 6.8 DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 9.0 DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 9.0 DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.0 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.0 >AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate receptor protein. Length = 1040 Score = 21.8 bits (44), Expect = 6.8 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 624 TISPIVRNRWKKLYTKNVLTKQELAFQ 544 +++P +N K T+ LTKQ AF+ Sbjct: 442 SVTPYNKNYTKFCSTEKRLTKQNTAFE 468 >DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride channel protein. Length = 383 Score = 21.4 bits (43), Expect = 9.0 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +2 Query: 584 YSFFHLFLTIGLIVWEALTAGWIQ 655 Y FH ++ LIV + A WI+ Sbjct: 215 YHLFHTYIPSALIVVMSWIAFWIK 238 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 21.4 bits (43), Expect = 9.0 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +3 Query: 348 SLFELADNLVNGYRDDTR 401 ++ EL DNL+ GY + R Sbjct: 5 NISELLDNLLRGYDNSVR 22 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 21.4 bits (43), Expect = 9.0 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 723 SIRYLTPNKQTMRSTSESKISPSCI 649 S +LTP + R+ S+ +SPS + Sbjct: 400 SEEHLTPKRFHSRAASKEDLSPSSL 424 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 21.4 bits (43), Expect = 9.0 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 723 SIRYLTPNKQTMRSTSESKISPSCI 649 S +LTP + R+ S+ +SPS + Sbjct: 400 SEEHLTPKRFHSRAASKEDLSPSSL 424 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 203,270 Number of Sequences: 438 Number of extensions: 4780 Number of successful extensions: 7 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22779405 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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