Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30349
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44610.1 68416.m04796 protein kinase family protein similar t...    29   3.2  
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    29   4.2  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   9.7  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    27   9.7  

>At3g44610.1 68416.m04796 protein kinase family protein similar to
           viroid symptom modulation protein (protein
           kinase)[Lycopersicon esculentum] gi|7672777|gb|AAF66637;
           contains protein kinase domain, Pfam:PF00069
          Length = 451

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 687 RSTSESKISPSCIQPAVKASHTISPIVRNRWKKLYTKN 574
           ++TS S + P+CI PAV   H   P +R R KK   +N
Sbjct: 262 QTTSSSCMIPNCIVPAVSCFH---PRIRRRKKKTDHRN 296


>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 190 NYVKYFK-ITKKANVFLNTISKICGKKRFHWYYLCTVINGYFVKFK 56
           N  +Y + I  K+N+  +  + +CG     W+Y C++ N +F+ F+
Sbjct: 113 NMPEYLQTIGSKSNIIFDKCT-LCGNVLSEWFYRCSICN-FFLDFR 156


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 4706

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 242 MSSEILSDSKYSVLVVQKLRKVF*NYKKGKCIFEHNIQN 126
           M S +L D    V + +++R+V  NY +G  + +  IQN
Sbjct: 1   MDSLLLEDFGQKVDLTRRIREVLLNYPEGTTVLKELIQN 39


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 ESLRISDDIIIKIQESFCFVFHFAWETLSS 306
           E  R+  D+++K  E  C+V H+  E + S
Sbjct: 554 EMERVRKDVVLKYTEGLCWVMHYYMEGVCS 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,351
Number of Sequences: 28952
Number of extensions: 297891
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)