Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30348
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 84 1e-17
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 82 7e-17
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 29 0.55
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 3.8
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 5.1
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 8.9
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 8.9
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 8.9
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 84.2 bits (199), Expect = 1e-17
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = -2
Query: 414 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKRPVIC 241
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NK+ C
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63
Score = 81.0 bits (191), Expect = 1e-16
Identities = 36/70 (51%), Positives = 54/70 (77%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
++TR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VT
Sbjct: 58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVT 117
Query: 79 NAAARLRSQE 50
NA A++RSQE
Sbjct: 118 NAGAKVRSQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 81.8 bits (193), Expect = 7e-17
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = -2
Query: 414 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKRPVIC 241
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NK+ C
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63
Score = 81.4 bits (192), Expect = 1e-16
Identities = 36/70 (51%), Positives = 54/70 (77%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
++TR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VT
Sbjct: 58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVT 117
Query: 79 NAAARLRSQE 50
NA A++RSQE
Sbjct: 118 NAGAKVRSQE 127
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 47 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 169
VL + R+ HSD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 340 TPIPLKFV--IAIRLMPDKSLRP 402
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 235 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 62
N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654
Query: 61 RSQENE 44
R + +
Sbjct: 655 RRESQK 660
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 460 KKRDSEPRGDTAAREGKKKKTRGGARYPIRPIVSRITI 573
KKR +EP G+ E K K T+ YP + + +T+
Sbjct: 228 KKRKTEPAGEGEQTEKKSKSTK---TYPKQVLEGNVTV 262
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 454 NIQDGYKTCLQADNRQKEDEEIYQASIGS 368
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 390 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 454 NIQDGYKTCLQADNRQKEDEEIYQASIGS 368
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,792
Number of Sequences: 5004
Number of extensions: 46042
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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