BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30348 (625 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 84 1e-17 SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 82 7e-17 SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 29 0.55 SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.7 SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 3.8 SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 5.1 SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 8.9 SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 8.9 SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 8.9 >SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 84.2 bits (199), Expect = 1e-17 Identities = 36/58 (62%), Positives = 45/58 (77%) Frame = -2 Query: 414 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKRPVIC 241 I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NK+ C Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63 Score = 81.0 bits (191), Expect = 1e-16 Identities = 36/70 (51%), Positives = 54/70 (77%) Frame = -1 Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80 ++TR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VT Sbjct: 58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVT 117 Query: 79 NAAARLRSQE 50 NA A++RSQE Sbjct: 118 NAGAKVRSQE 127 >SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 81.8 bits (193), Expect = 7e-17 Identities = 36/58 (62%), Positives = 44/58 (75%) Frame = -2 Query: 414 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKRPVIC 241 IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NK+ C Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYC 63 Score = 81.4 bits (192), Expect = 1e-16 Identities = 36/70 (51%), Positives = 54/70 (77%) Frame = -1 Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80 ++TR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VT Sbjct: 58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVT 117 Query: 79 NAAARLRSQE 50 NA A++RSQE Sbjct: 118 NAGAKVRSQE 127 >SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 511 Score = 29.1 bits (62), Expect = 0.55 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 47 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 169 VL + R+ HSD + + +F DQ +RR + LC +L Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179 >SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%) Frame = +1 Query: 340 TPIPLKFV--IAIRLMPDKSLRP 402 TP+P+KFV IA+ MP +LRP Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449 >SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosaccharomyces pombe|chr 1|||Manual Length = 1162 Score = 26.2 bits (55), Expect = 3.8 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -1 Query: 235 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 62 N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654 Query: 61 RSQENE 44 R + + Sbjct: 655 RRESQK 660 >SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 362 Score = 25.8 bits (54), Expect = 5.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 460 KKRDSEPRGDTAAREGKKKKTRGGARYPIRPIVSRITI 573 KKR +EP G+ E K K T+ YP + + +T+ Sbjct: 228 KKRKTEPAGEGEQTEKKSKSTK---TYPKQVLEGNVTV 262 >SPBC336.10c |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 25.0 bits (52), Expect = 8.9 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = -1 Query: 454 NIQDGYKTCLQADNRQKEDEEIYQASIGS 368 NI DGY + D K+D + + +G+ Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123 >SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1098 Score = 25.0 bits (52), Expect = 8.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 390 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265 F H D YD+L NW++ ++ +RFK NI G Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863 >SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 25.0 bits (52), Expect = 8.9 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = -1 Query: 454 NIQDGYKTCLQADNRQKEDEEIYQASIGS 368 NI DGY + D K+D + + +G+ Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,361,792 Number of Sequences: 5004 Number of extensions: 46042 Number of successful extensions: 122 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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