Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30348
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 107 5e-24
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 107 5e-24
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 89 3e-18
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 89 3e-18
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 30 1.3
05_05_0377 - 24498664-24500215,24500306-24500643 29 4.0
01_01_1171 - 9321652-9321712,9322997-9323199 29 4.0
08_02_1238 + 25486263-25487574,25488210-25489117 28 5.2
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 28 5.2
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 27 9.2
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 27 9.2
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 27 9.2
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 9.2
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 27 9.2
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 9.2
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 107 bits (258), Expect = 5e-24
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
++TRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VT
Sbjct: 62 KKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVT 121
Query: 79 NAAARLRSQENE 44
N ARLRSQE+E
Sbjct: 122 NKLARLRSQEDE 133
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = -2
Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 264 SNKR 253
S+K+
Sbjct: 60 SDKK 63
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 107 bits (258), Expect = 5e-24
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
++TRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VT
Sbjct: 129 KKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVT 188
Query: 79 NAAARLRSQENE 44
N ARLRSQE+E
Sbjct: 189 NKLARLRSQEDE 200
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/32 (71%), Positives = 30/32 (93%)
Frame = -2
Query: 348 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKR 253
+WR+P+GID+RVRR+FKG LMPNIGYGS+K+
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 130
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -2
Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 352
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
++TRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 62 KKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = -2
Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 264 SNKR 253
S+K+
Sbjct: 60 SDKK 63
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = -2
Query: 456 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 277
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 276 IGYGSNKR 253
IGYGS+K+
Sbjct: 378 IGYGSDKK 385
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNR 170
++TRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 384 KKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 460 KKRDSEPRGDTAAREGKKKKTRGGA 534
++R+ P AA +GKKKK +GGA
Sbjct: 2638 QRRNESPAAAAAANKGKKKKKKGGA 2662
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +1
Query: 214 LGPYGIHLGAYDGSLVGTVTDVGHQVL--TLESPADSVVNTSRFTPIPLKFVIAIRLMPD 387
L P+G L Y T GH VL L SPA TP+P L +
Sbjct: 472 LAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGG-------TPVPASVFEDCCLAVE 524
Query: 388 KSLRPLFDDCRPVNRSYSHL 447
+ L ++ CR +RS L
Sbjct: 525 EGLNSVYRQCRAADRSIGPL 544
>01_01_1171 - 9321652-9321712,9322997-9323199
Length = 87
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 418 RPVNRSYSH-LVCFFKKRDSEPRGDTAAREGKKKKTRGGARYPIRPIVSRITIHWP 582
RP++R +H LV D + +G +G ++ + G R P +TI WP
Sbjct: 27 RPMHRGLNHMLVDAVVHHDDDLQGRGYGEKGIEEAGQAGQRSFAEPDADAVTIRWP 82
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +2
Query: 104 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 187
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 262 QQETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVS-SKKRKLIVERAQQ 98
++E + M + KVL K LE + RK AE+ G+ +K+KL E A +
Sbjct: 269 EEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASK 324
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 306 RFKGQYLMPNIGYGSNKRPVICSQMDSVRS*FTMLK 199
RFKG L+PN S+++ CS + S+ S F+ ++
Sbjct: 83 RFKGSVLLPNYPMSSSRKSTACSGL-SLSSCFSNIR 117
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 193 PAL*HCELGPYGIHLGAYDGSLVGTVTDVGHQVLTLESPADSVVNT 330
PA+ HC+L P I LG DG +V V D G + + + ++N+
Sbjct: 869 PAIVHCDLKPSNILLG--DG-MVAHVGDFGLAKILTDPEGEQLINS 911
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 415 CRPVNRSYSHLVCFFKKRDSEPRGDTAAREGKKKKTR 525
CRP N+ + + F RDS+ + + E K K R
Sbjct: 444 CRPENKDLLYPISFLSPRDSKELFNRSVSESKSTKDR 480
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 515 FFFPSRAAVSPRGSLSRF 462
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 515 FFFPSRAAVSPRGSLSRF 462
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 152 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 54
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,098
Number of Sequences: 37544
Number of extensions: 324164
Number of successful extensions: 1091
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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