Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30348
         (625 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...   122   1e-27
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...   122   1e-27
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...   122   1e-27
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...   122   1e-27
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.        95   2e-19
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      51   3e-06
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      49   1e-05
BC033000-1|AAH33000.1|  956|Homo sapiens TTC17 protein protein.        31   4.4  
AK001752-1|BAA91883.1|  956|Homo sapiens protein ( Homo sapiens ...    31   4.4  
AK001540-1|BAA91747.1|  707|Homo sapiens protein ( Homo sapiens ...    31   4.4  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score =  122 bits (293), Expect = 1e-27
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 262
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 261 NKR 253
           NK+
Sbjct: 63  NKK 65



 Score =  116 bits (279), Expect = 7e-26
 Identities = 57/86 (66%), Positives = 67/86 (77%)
 Frame = -1

Query: 301 QGSILDAQHRLRFQQETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 122
           +G IL         ++T+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 121 LIVERAQQLSIRVTNAAARLRSQENE 44
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  122 bits (293), Expect = 1e-27
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 262
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 261 NKR 253
           NK+
Sbjct: 63  NKK 65



 Score =  116 bits (279), Expect = 7e-26
 Identities = 57/86 (66%), Positives = 67/86 (77%)
 Frame = -1

Query: 301 QGSILDAQHRLRFQQETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 122
           +G IL         ++T+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 121 LIVERAQQLSIRVTNAAARLRSQENE 44
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  122 bits (293), Expect = 1e-27
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 262
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 261 NKR 253
           NK+
Sbjct: 63  NKK 65



 Score =  116 bits (279), Expect = 7e-26
 Identities = 57/86 (66%), Positives = 67/86 (77%)
 Frame = -1

Query: 301 QGSILDAQHRLRFQQETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 122
           +G IL         ++T+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 121 LIVERAQQLSIRVTNAAARLRSQENE 44
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  122 bits (293), Expect = 1e-27
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 262
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 261 NKR 253
           NK+
Sbjct: 63  NKK 65



 Score =  116 bits (279), Expect = 7e-26
 Identities = 57/86 (66%), Positives = 67/86 (77%)
 Frame = -1

Query: 301 QGSILDAQHRLRFQQETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 122
           +G IL         ++T+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 121 LIVERAQQLSIRVTNAAARLRSQENE 44
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           ++T+H+LP+GF K LVHNVKELE+L++ N+ YC EI H VSSK  K I+ERA Q+ IRVT
Sbjct: 36  KKTKHILPSGFWKFLVHNVKELEVLLVSNKSYCVEITHDVSSKNCKAILERAAQVVIRVT 95

Query: 79  NAAARLRSQENE 44
           NA A L S E+E
Sbjct: 96  NANASLHSAESE 107


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 3e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 349
           A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 49.2 bits (112), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = -2

Query: 441 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 352
           A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>BC033000-1|AAH33000.1|  956|Homo sapiens TTC17 protein protein.
          Length = 956

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 406  FDDCRPVNRSYSHLVCFFKKRDSEPRGDTAAREGKKKKT---RGGARYPIRPIVSRITIH 576
            + DCR  +   +  + F  KR  +P+GD     GKK +T     G RY     ++   + 
Sbjct: 881  YGDCRSEDDEATEWITFQVKRVKKPKGDHKKTPGKKVETGQIENGHRYQANLEITGPKVA 940

Query: 577  WPSFYNVVTGKTLALP 624
             P    ++  KT  +P
Sbjct: 941  SPGPQGLLDWKTRKVP 956


>AK001752-1|BAA91883.1|  956|Homo sapiens protein ( Homo sapiens cDNA
            FLJ10890 fis, clone NT2RP4002071. ).
          Length = 956

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 406  FDDCRPVNRSYSHLVCFFKKRDSEPRGDTAAREGKKKKT---RGGARYPIRPIVSRITIH 576
            + DCR  +   +  + F  KR  +P+GD     GKK +T     G RY     ++   + 
Sbjct: 881  YGDCRSEDDEATEWITFQVKRVKKPKGDHKKTPGKKVETGQIENGHRYQANLEITGPKVA 940

Query: 577  WPSFYNVVTGKTLALP 624
             P    ++  KT  +P
Sbjct: 941  SPGPQGLLDWKTRKVP 956


>AK001540-1|BAA91747.1|  707|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10678 fis, clone NT2RP2006472. ).
          Length = 707

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 406 FDDCRPVNRSYSHLVCFFKKRDSEPRGDTAAREGKKKKT---RGGARYPIRPIVSRITIH 576
           + DCR  +   +  + F  KR  +P+GD     GKK +T     G RY     ++   + 
Sbjct: 632 YGDCRSEDDEATEWITFQVKRVKKPKGDHKKTPGKKVETGQIENGHRYQANLEITGPKVA 691

Query: 577 WPSFYNVVTGKTLALP 624
            P    ++  KT  +P
Sbjct: 692 SPGPQGLLDWKTRKVP 707


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,772,185
Number of Sequences: 237096
Number of extensions: 1756857
Number of successful extensions: 4840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4840
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)