Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30348
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   127   1e-29
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   127   1e-29
Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   124   1e-28
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   124   1e-28
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   124   1e-28
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   124   1e-28
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   124   1e-28
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   120   1e-27
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    40   0.003
AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA...    28   8.9  

>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  127 bits (307), Expect = 1e-29
 Identities = 56/66 (84%), Positives = 58/66 (87%)
 Frame = -2

Query: 450 YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 271
           +KM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 270 YGSNKR 253
           YGSNKR
Sbjct: 72  YGSNKR 77



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 76  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 135

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 136 NPNGRLRSQENE 147


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  127 bits (307), Expect = 1e-29
 Identities = 56/66 (84%), Positives = 58/66 (87%)
 Frame = -2

Query: 450 YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 271
           +KM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 270 YGSNKR 253
           YGSNKR
Sbjct: 72  YGSNKR 77



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 76  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 135

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 136 NPNGRLRSQENE 147


>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  124 bits (299), Expect = 1e-28
 Identities = 55/64 (85%), Positives = 56/64 (87%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  124 bits (299), Expect = 1e-28
 Identities = 55/64 (85%), Positives = 56/64 (87%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  124 bits (299), Expect = 1e-28
 Identities = 55/64 (85%), Positives = 56/64 (87%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  124 bits (299), Expect = 1e-28
 Identities = 55/64 (85%), Positives = 56/64 (87%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  124 bits (299), Expect = 1e-28
 Identities = 55/64 (85%), Positives = 56/64 (87%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score =  119 bits (287), Expect = 3e-27
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           + TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 79  NAAARLRSQENE 44
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  120 bits (290), Expect = 1e-27
 Identities = 54/64 (84%), Positives = 55/64 (85%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNKR
Sbjct: 61  SNKR 64



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 32/58 (55%), Positives = 43/58 (74%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 86
           + TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = -3

Query: 251 PSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECG 72
           P +A   I   P +Q  RAG    A+  +LRRDR R L +EA+ D     AA     +  
Sbjct: 33  PPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDRPRRLLQEAQGDCRARQAAVGPPHQPQ 92

Query: 71  RSPPVPGERINI 36
           RSP    ER+++
Sbjct: 93  RSPAFSRERVSL 104



 Score = 33.9 bits (74), Expect = 0.18
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 328 Y*QQSPQAIQGSILDAQHRLRFQQ 257
           Y QQS   +QG++ DAQHRLR +Q
Sbjct: 7   YRQQSASPLQGTVSDAQHRLRIEQ 30


>AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA
           protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 191 NLDDAKQEVLRRDRSRCL-FEEAEADRGKSPAAQHQS 84
           NL  ++   LRR RSRCL +      R  SP+ +H S
Sbjct: 132 NLSRSRSRTLRRSRSRCLGWSCWSLRRSPSPSRRHHS 168


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,171,709
Number of Sequences: 53049
Number of extensions: 527133
Number of successful extensions: 1624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)