Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30348
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 96 2e-20
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 31 0.88
AF100663-3|AAC68980.1| 529|Caenorhabditis elegans Udp-glucurono... 28 4.7
U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein. 28 6.2
AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeri... 28 6.2
AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying de... 28 6.2
AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying de... 28 6.2
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 27 8.2
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 27 8.2
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/72 (61%), Positives = 60/72 (83%)
Frame = -1
Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
+ TR +LPNG++KVLV NVK+L++L+MQ+ KY EI HGVS+K RK IVERA QL+I++T
Sbjct: 63 RRTRFVLPNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLT 122
Query: 79 NAAARLRSQENE 44
N ARLR++E+E
Sbjct: 123 NGNARLRTEESE 134
Score = 79.4 bits (187), Expect = 2e-15
Identities = 32/54 (59%), Positives = 44/54 (81%)
Frame = -2
Query: 414 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKR 253
+VKK+ +F RH+SDRY ++ +WRKP+GIDNRVRRRF+G MP IG+GS++R
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRR 64
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +1
Query: 301 ESPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD-- 471
E P +S+ T R++ +P +++ +R+ ++ ++ FD+ R HLV + R+
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117
Query: 472 SEPRGDTAAREGKKKKTRGGARYPIRPIVSRI 567
PRG T + +++ R Y + I+ R+
Sbjct: 1118 ENPRGITES-SVEERIVRLKEGYELTVIIIRV 1148
>AF100663-3|AAC68980.1| 529|Caenorhabditis elegans
Udp-glucuronosyltransferase protein20 protein.
Length = 529
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 157 LRSTSCFASSRFPAL*HCELGPYGIHLGAYDGSLVGTVTDVGHQVLTLESPADSVVNTS 333
L S CFASS + L + L +G + G+ T+TD GH V L D + TS
Sbjct: 7 LFSAICFASS-YKILFYTNL--FGHSHVKFLGAAADTLTDAGHNVTVLIPVFDKALKTS 62
>U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein.
Length = 355
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 436 YSHLVCFFKKRDSEPRGDTAARE 504
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
>AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 355
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 436 YSHLVCFFKKRDSEPRGDTAARE 504
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
>AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying
defective protein 30,isoform b protein.
Length = 303
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 436 YSHLVCFFKKRDSEPRGDTAARE 504
YSHL +F + D PR AARE
Sbjct: 229 YSHLADYFPEYDGPPRDPIAARE 251
>AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying
defective protein 30,isoform a protein.
Length = 355
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 436 YSHLVCFFKKRDSEPRGDTAARE 504
YSHL +F + D PR AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +1
Query: 82 SL*C*AAGLFPRSASASSKRHRERSLRSTSCFASSRFPAL*HCELGPYGIHLGAYDGSLV 261
SL C ++ S +E+ + F S+ FPA+ C L P+ HL A +
Sbjct: 74 SLVCICLCMYSFSHVKDKYDRKEKIVNVELVFESAPFPAITVCNLNPFKNHL-ARSVPEI 132
Query: 262 GTVTDVGHQVLTLESPA 312
D HQ + + A
Sbjct: 133 SETLDAFHQAVVYSNDA 149
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +1
Query: 82 SL*C*AAGLFPRSASASSKRHRERSLRSTSCFASSRFPAL*HCELGPYGIHLGAYDGSLV 261
SL C ++ S +E+ + F S+ FPA+ C L P+ HL A +
Sbjct: 74 SLVCICLCMYSFSHVKDKYDRKEKIVNVELVFESAPFPAITVCNLNPFKNHL-ARSVPEI 132
Query: 262 GTVTDVGHQVLTLESPA 312
D HQ + + A
Sbjct: 133 SETLDAFHQAVVYSNDA 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,670
Number of Sequences: 27780
Number of extensions: 263848
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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