Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30348
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   136   1e-34
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.8  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  136 bits (330), Expect = 1e-34
 Identities = 60/64 (93%), Positives = 63/64 (98%)
 Frame = -2

Query: 444 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 265
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 264 SNKR 253
           SNK+
Sbjct: 61  SNKK 64



 Score =  130 bits (315), Expect = 8e-33
 Identities = 63/72 (87%), Positives = 68/72 (94%)
 Frame = -1

Query: 259 QETRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 80
           ++TRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIRVT
Sbjct: 63  KKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVT 122

Query: 79  NAAARLRSQENE 44
            A+ARLRSQENE
Sbjct: 123 YASARLRSQENE 134


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 23 LIIQLYLFVLLGPEASGRI 79
          L +  +LFV+   ++SGRI
Sbjct: 15 LFVNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 23 LIIQLYLFVLLGPEASGRI 79
          L +  +LFV+   ++SGRI
Sbjct: 15 LFVNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 23 LIIQLYLFVLLGPEASGRI 79
          L +  +LFV+   ++SGRI
Sbjct: 15 LFVNSFLFVIAAQDSSGRI 33


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 530 PPRVFFFFPSRAAVSPRGSLSRFLKKHTRW 441
           PP V    P R   +PR + ++  + H R+
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRY 159


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2
          protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 56 GPEASGRIRHSDA 94
          GP   GR +H+DA
Sbjct: 45 GPNELGRFKHTDA 57


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 56 GPEASGRIRHSDA 94
          GP   GR +H+DA
Sbjct: 50 GPNELGRFKHTDA 62


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 56 GPEASGRIRHSDA 94
          GP   GR +H+DA
Sbjct: 50 GPNELGRFKHTDA 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,204
Number of Sequences: 438
Number of extensions: 3257
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)