Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30347
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.62 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   3.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   5.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   7.6  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 127  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 41
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 188 ESHLGPTDDLHTSRKLFQSEEGKLTNMHENHQLLI 292
           E H GP D  H      +  E    NM  +H+LL+
Sbjct: 408 EHHKGPKDKEHHQGPKEKHNERPEQNMQSSHELLV 442


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 140 SKNFEQRR*NVTNLTSESHLGPTDDLHTSRKLFQSEEGKLTNMHENHQL 286
           ++ F +RR N  ++ S+    P+D+ H  ++   S++  ++N H    +
Sbjct: 635 TEEFTERRDNNGSIPSKQ---PSDEQHLGKESLPSQQSTVSNHHRKESI 680


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 174 RISRQSHTLGQRTTCTPPESCSKVKK 251
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 167 NVTNLTSESHLGPTDDLHTSRKLFQS 244
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 118 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 225
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  RIKVNKNINKMSAWRQAGLT 90
           +I + K I+ +  WRQ GLT
Sbjct: 277 QITLKKQISDLQEWRQMGLT 296


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 326 LNSIIYCTILHKLIVDDFHACWLTFLLH 243
           ++S+++C +  KL+V    A  LTFL +
Sbjct: 269 IDSVVHCLLSTKLLVRKLAAELLTFLCY 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,298
Number of Sequences: 5004
Number of extensions: 22451
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)