Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30347
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   1e-09
02_04_0349 + 22222091-22222639,22222718-22223695                       27   5.2  
04_01_0024 + 344621-344830,344926-345705                               26   9.1  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +1

Query: 70  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 213
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 244 TLEQLSGGVQVVRWP 200
           TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420


>04_01_0024 + 344621-344830,344926-345705
          Length = 329

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 109 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPW 201
           +   V RR +KQE RAEA K  +    V  PW
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPW 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,082,132
Number of Sequences: 37544
Number of extensions: 141671
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)