Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30347
(344 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17) 29 1.3
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6) 28 2.3
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0) 28 2.3
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09) 27 4.1
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59) 27 5.4
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2) 26 7.1
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26) 26 9.4
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10) 26 9.4
>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
Length = 321
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 228 LEVCRSSVGPRCDSDVRFVTFQRLCSK 148
L C SSV PR D+D R +TF+ C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316
>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
Length = 190
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 228 LEVCRSSVGPRCDSDVRFVTFQRLCSK 148
L C SSV PR D+D R +TF C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185
>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 228 LEVCRSSVGPRCDSDVRFVTFQRLCSK 148
L C SSV PR D+D R +TF C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532
>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 651
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 198 LGQRTTCTPPESCSKVKKES*PTCMKIINY*FM*NCTINN 317
L TTC + C ++KK S + +N+ NCT N+
Sbjct: 175 LSDNTTCRDIDECEELKKTSLSCGQRCLNFPGGYNCTCNS 214
>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 148 FRAEALKRDESHVRVTPWANGRPAH 222
FR L +S VR +PWA RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129
>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 228 LEVCRSSVGPRCDSDVRFVTFQRLCS 151
L C SSV PR D+D R +TF+ C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249
>SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)
Length = 817
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 261 VNFPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLC 154
VN SL LE+ + P CDSD+ + Q LC
Sbjct: 560 VNVVESLAGKVLELPPQGI-PSCDSDIYSIALQLLC 594
>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 57 QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTP 224
+NER+ A+W +++ LK ++ + T R++ R SR S +G + T P
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRSA-----SRHSIKVGPQETLIP 202
>SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 261 VNFPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 157
V +P +W S + + + G R + RF+T QR+
Sbjct: 473 VRYPKVIWRSTTAIWKENAGVRNLTHFRFLTEQRI 507
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 148 FRAEALKRDESHVRVTPWANGRPAH 222
F A L +S VR +PWA RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856
>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
Length = 483
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 148 FRAEALKRDESHVRVTPWANGRPAH 222
F A L +S VR +PWA RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 192 HTLGQRTTCTPPESCSKVKKE 254
H GQ TPP+SCS + ++
Sbjct: 1227 HNYGQPPPMTPPDSCSPIPED 1247
>SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)
Length = 140
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 37 KVNKNINKMSAWRQAGLTYINYSNIAAKVLRRS 135
++N ++NKMS+W +N S A +L S
Sbjct: 32 ELNSSLNKMSSWSSTSHLLLNASKTKAMLLSTS 64
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 219 CRSSVGPRCD-SDVRFVTFQRLCSK 148
C+ V PRCD S VR + Q+ SK
Sbjct: 3229 CQPEVAPRCDTSQVRLASTQQCVSK 3253
>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/53 (20%), Positives = 25/53 (47%)
Frame = +1
Query: 25 FLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 183
F+ + + + + R +TY N+S+ A+ + + Q+ R E ++ H
Sbjct: 333 FIANRAHLTSRRAHSSRAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385
>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
Length = 360
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 81 SLPPSAHFVNVLIYFYSQK*IEIFL 7
S+PP++ V ++ FYS IE+FL
Sbjct: 145 SIPPTSEAVPLIGIFYSASMIEVFL 169
>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
Length = 384
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 81 SLPPSAHFVNVLIYFYSQK*IEIFL 7
S+PP++ V ++ FYS IE+FL
Sbjct: 209 SIPPTSEAVPLIGIFYSASMIEVFL 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,431,131
Number of Sequences: 59808
Number of extensions: 165832
Number of successful extensions: 453
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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